Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00273 ATGAGGTACATGAAGCCCTTGCAGTTGTTTCAGCATTTGAGGAATTCAACCCGAAACCAACGGGGAAGGTTGCTCGGTTTGGATGTTGGGGAGAAATATGTTGGCCTCGCTCTTTCTGACTTTGACAACAAAATTGCTTCACCTTTCAGTGTTCTCGTCAGGAAGAAATCAAATATTAGTTTAATGGCTTCTGATTTTCAGAGTCTGATGTCTGAATATTCCTTGAAGGGATTTGTTGTTGGCCTCCCTTTTGACAGGCATCGGGTGGCTTCTGAAGCTGCGCCGGTGAAGATCTTAATCGATCAGCTCTGTAGAACAAAAATGCTTGAAGGAGTAAAGTATACATATTGGAATGAGTGCTTTACATCAAAAAATGTGGAATTGCTTTTAAAGCCTTTGAACTTGAATCATCCAGTACTCTCCAAGACTATTCTAGACAAGTTTGCAGCGGTCGGAATACTTCAAGGTTTTATTAAGAACACCCCAAGATGTCTGCAGGGACCTAAACACTTCTAA 516 0.4147 MRYMKPLQLFQHLRNSTRNQRGRLLGLDVGEKYVGLALSDFDNKIASPFSVLVRKKSNISLMASDFQSLMSEYSLKGFVVGLPFDRHRVASEAAPVKILIDQLCRTKMLEGVKYTYWNECFTSKNVELLLKPLNLNHPVLSKTILDKFAAVGILQGFIKNTPRCLQGPKHF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00273 171 Pfam Holliday junction resolvase 23 159 IPR005227 GO:0006364
Vian10g00273 171 SMART rnase_8s 22 126 IPR006641 GO:0006139
Vian10g00273 171 Gene3D - 21 165 IPR037027 GO:0006139
Vian10g00273 171 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 162 IPR005227 GO:0006364
Vian10g00273 171 CDD YqgF 24 160 IPR005227 GO:0006364
Vian10g00273 171 Hamap Putative pre-16S rRNA nuclease [yqgF]. 22 162 IPR005227 GO:0006364
Vian10g00273 171 FunFam Putative pre-16S rRNA nuclease 21 169 - -
Vian10g00273 171 SUPERFAMILY Ribonuclease H-like 22 161 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00273 Vian-Chr10 2533645 2535637 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00273 - - gmx:100305864 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00273 10 2533645 2535637 Vian10g00273 10 2533645 2535637 ECH