Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00239 ATGGAAGATCTTCAAAATTCAGCTCTAAAATTCTTCTCCGATCAAGAGCTCTGTAATGCCGATATCGTCCCTCCTGCTCAGGTTCGAGCGAGAATTGAAGTTTCTGTCCTCAATTTTCTCAAAATATTAAATGCATCAAACCCTGCCATCTCAGATTTGCCTTTGATTCAGAGGAAATATAGCAATAGTCGAGTGAATCATGGCCTTTTGACAGAACTTTCACGTGTTTTTCTCTCCAATTCCATATCCACAAGGTCTCTGATGAGACCTAATGCAGCAAAGGCCTTCGTTAGGGTGTGGAAGGTGATGGAGATGTGCTATCAGATATTGCTTCAGGAAAAGCGGGTCACGCAGAGGGAACTCTTCTACAAGTTGCTCTGTGATTCGCCACACCTGTTTCCCTCTCAAACGCATGTTAACAGGACAATCCAAGATCTAGTAGCATTGCTTCGGTGCAGCCGATACAGTCTTGGAATCATGGCTTCCAGTCGAGGACTCATAGCTGGCCGTCTGACTTTGCAGGAACCGGGCAAAGAGGTTGTTGATTGCTCTTTGTGTGGTTCTTCTGGATTTGCAATTTCTGGTGACTTGAATTTGTTACAGAGATTGGTTCTACATGCAGATGCTCGGTACATTATAATAGTTGAAAAGCACGCAATATTTCAGCGGCTTACTGAGGATCGGTTCTTTCATCAAATTCCGAGCATTCTTATCACTGCTAAAGGCTATCCAGACATGGCCACAAGATTTCTTCTTTATCGGATCAATCGAGCTTTTCCAGACTTGCCAATTTTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCCATTCTATGCACCTTCAAATTTGGAAGTGTAGCAATGGGCCTAGAGGCCTACAGATACGCTTGCAACGTCAAGTGGTTAGGACTGCGGAGTAATGATCTACCTTTGGTGCCTGATCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCGAAGCTTGATGTCCTCAGGAATATTACTGGATAGTTACAAGGATGAAGTGGCCGTAATGATTCAAAGAGGAAGGAGAGCTGAAATCGAGGCTCTATACTTTCATGGATATGACTATTTGGGGAAGTATATTGCTAAAAAAATTGTACAGTCCGATTACGTATGA 1149 0.4317 MEDLQNSALKFFSDQELCNADIVPPAQVRARIEVSVLNFLKILNASNPAISDLPLIQRKYSNSRVNHGLLTELSRVFLSNSISTRSLMRPNAAKAFVRVWKVMEMCYQILLQEKRVTQRELFYKLLCDSPHLFPSQTHVNRTIQDLVALLRCSRYSLGIMASSRGLIAGRLTLQEPGKEVVDCSLCGSSGFAISGDLNLLQRLVLHADARYIIIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDMATRFLLYRINRAFPDLPILALVDWNPAGLAILCTFKFGSVAMGLEAYRYACNVKWLGLRSNDLPLVPDQSFVPLKPKDLQIARSLMSSGILLDSYKDEVAVMIQRGRRAEIEALYFHGYDYLGKYIAKKIVQSDYV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00239 382 PRINTS DNA topoisomerase VI subunit A family signature 154 169 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vian10g00239 382 PRINTS DNA topoisomerase VI subunit A family signature 236 257 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vian10g00239 382 PRINTS DNA topoisomerase VI subunit A family signature 136 153 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vian10g00239 382 PRINTS DNA topoisomerase VI subunit A family signature 212 229 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vian10g00239 382 PRINTS DNA topoisomerase VI subunit A family signature 269 285 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vian10g00239 382 SUPERFAMILY DNA topoisomerase IV, alpha subunit 93 382 IPR036078 GO:0003677|GO:0005694
Vian10g00239 382 CDD TOPRIM_TopoIIB_SPO 210 367 IPR034136 -
Vian10g00239 382 Gene3D - 19 162 IPR036388 -
Vian10g00239 382 FunFam Meiotic recombination protein SPO11-2 18 162 - -
Vian10g00239 382 Gene3D - 163 382 - -
Vian10g00239 382 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 26 381 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vian10g00239 382 Pfam Type IIB DNA topoisomerase 94 159 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00239 K10878 - gmx:100784732 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00239 10 2087604 2090259 Vian10g00239 10 2087604 2090259 ECH