Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00237 ATGGTTAGTCACAATGGATTAGCCATGATGGATGCCGAGAAGTTGACGAGCTCCTCAGGCTCACCTAATTATGATTATGCAGATGCTCTTGGCAAAGCCATTTTGTTTTTTGAAGGACAACGCTCAGGAAAGTTGCCGTCAAACCAAAGAGTGAAGTGGAGGGAAGACTCCGCTCTCTCTGATGGCAAACTTCAGAACGTGAATTTGATTGGAGGGTACTACGATGCTGGTGATAACGTCAAGTTTGGATGGCCGATGGCATTTGCTACGAGCTTATTGAGTTGGGCTGCTGTAGAGTATGAGAGTGAGATATCTTCGGTTGGAGATGGGAACGCTGATCACAACTGTTGGGAGCGACCAGAAGACATGGATACACCAAGGACAGTGTATAAGATAGATGCGAATTCTCCAGGAACTGAAGCCGCAGCTGAGTCTGCTGCTGCTCTTTCTGCCGCTTCAATTGTATTCAGGAAAATAGATGCCAAGTATTCCTCCACGCTATTAAGCCATTCAAAATCACTGTTTGATTTTGCAGACAAGAACAGAGGTTCTTATTCCGGTTCTTGCCCATTCTATTGCTCGTACTCGGGTTACCAGGATGAACTGCTATGGGCGGCTGCTTGGTTGTACAAGGCAAGTGGAGAAAGCAAGTATCTGACCTACATCATAGGTAACCAAGGATCGAGCCAGGCAGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGGGCTCAGACATTACTAACCGAGGAATTCTACGGTGGAAAGAAAGAACTGACCAAGATTAAGAGTGACGCTGAGTCATTTATATGCTCTGTGATGCCAGGAAGTAGCTCTCGACAGATTAAAACAACTCCTGGTGGTCTTCTGTTTACTAGAGATAGTAGCAATTTGCAATATACCACGAGCTCGACCATGGTGGACTACATATTAGGAAGCAATCCGATGAAGATGTCGTATATGGTGGGATTTGGCAGCAAATACCCAAAGCAATTACATCACAGAGCCTCGTCCATACCTTCAATCAAAGTTCATCCGGCGAAGTTGGGTTGCAATGGTGGTCTATCAGATTATTACAATTCTCCTAATCCAAATCCCAATACTCATGTGGGTGCCATTGTTGGAGGCCCCGATTCAAATGACCATTTCAATGATGCAAGATCTGACTATTCCCACACCGAGCCTACCACGTACATGAATGCTGCTTTCGTCGCTTCAGTGTCTGCTTTGCTTGCCAAAACCTAA 1245 0.453 MVSHNGLAMMDAEKLTSSSGSPNYDYADALGKAILFFEGQRSGKLPSNQRVKWREDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFATSLLSWAAVEYESEISSVGDGNADHNCWERPEDMDTPRTVYKIDANSPGTEAAAESAAALSAASIVFRKIDAKYSSTLLSHSKSLFDFADKNRGSYSGSCPFYCSYSGYQDELLWAAAWLYKASGESKYLTYIIGNQGSSQAVSEFSWDNKFVGAQTLLTEEFYGGKKELTKIKSDAESFICSVMPGSSSRQIKTTPGGLLFTRDSSNLQYTTSSTMVDYILGSNPMKMSYMVGFGSKYPKQLHHRASSIPSIKVHPAKLGCNGGLSDYYNSPNPNPNTHVGAIVGGPDSNDHFNDARSDYSHTEPTTYMNAAFVASVSALLAKT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00237 414 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 383 401 IPR033126 -
Vian10g00237 414 PANTHER ENDO-1,4-BETA-GLUCANASE 106 307 - -
Vian10g00237 414 Pfam Glycosyl hydrolase family 9 26 104 IPR001701 GO:0004553|GO:0005975
Vian10g00237 414 Pfam Glycosyl hydrolase family 9 106 306 IPR001701 GO:0004553|GO:0005975
Vian10g00237 414 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 309 335 IPR018221 -
Vian10g00237 414 Gene3D - 21 414 IPR012341 GO:0005975
Vian10g00237 414 SUPERFAMILY Six-hairpin glycosidases 23 412 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00237 Vian-Chr10 2078739 2081407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00237 25 412 Glycoside Hydrolase AT4G23560 62.198 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00237 - - gmx:547834 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00237 10 2078739 2081407 Vian10g00237 10 2078739 2081407 ECH