LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian10g00235	ATGAACGGGGCGGTGGGGTTGCCATTGCCGGCAAATTCGTCGCCATCAGTGATCAACATGTACAGAATACAAAAGGTCACGGAGCGCTTGGCTTGGCTTGCTCAACCTGGCAACCGAGGCGATCCTAAAGAATTTTATAACCACTGCCTCTCCCTCTCTCGAGGCATTGATTATGCACTGGCCAATGGGGAAATTCCAAGCAATGCTCACGAGCTGCCTTTGCTGGTGAAGCAGATTTGTCAACTAAAGAATGATGAACTTTCGCAAGCTGCTATGATGGTGTTGATGATATCTGTAAAGGGTGCCTGTGAAATTGGATGGTTCCAAACGAAAGAATCACAAGAACTTCTTACTATTTTGGATGAGATCGGAAAAGTCTACAGCAGTATGGGGAGTATAAATGCCACATCTAGACAATGCAGTTCTGAAATATCAACTATAATGGAGAAGTTCTATCCCCATGTTAAATTGGGTTCAATACTTGCATCAATTGAGATCCAGCCTGGATATGGAGCTTCTCTGGTTGGTTTTCATATTACCAAGAGTGAATTTGTTAAAGAGAAACTTTTTTTATTGGTGGCACAGATAGATAACATTGAGATATCAGCATGCCTCATAAGTCCTCCGCAAGCGAATTTTCTCCTCAATGGAAAAGGAATAGCCAATAGGACCTATGTTGAAATGGATCCTGGACCACAAATGCCAACTGATGTGACTGCTATGCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGCCAGTTCAATGGTCGTTACATTGTACTCGTTGCCTATATGAGTTTTACACCCTTGCATGAAGATCCAGTTCTTCAAGATTATCTCCAGCCTGCTGTTACCTCTATTGATTTTGATTCAGATATTGTTGAGGGGGCTTCACAGATTTCGCTAAATTGTCCAATAAGCTTTACACGTATTAAGACTCCTGTCAAAGGGCGATCATGCAAACATTTCCAGTGTTTTGACTTTAACAACTTCATTAGTATCAATTCTAAAAGGCCATCCTGGCGCTGCCCTCATTGCAATCAGTATGTCTGTTATGCTGATATTCGACTTGACCGAAACATGGTTGAGATCCTGAAAAATGTTGGTGAGAGCATTACGGAAGTGATTGTCCTTGCTGATGGATCTTGGAAGGCAGTCTCGGAAAAAGATCATGATGTGGATAAGATGCAAAAGAAGGCTCCCAACCATGAAAAGGAACAAACTGAACCACAAGAATATACTTGCTCTCCTGCAACTGTTGACCTCACCGAAGATGATGATCATGTGGAGGCAATGGACTCTTCTGAAATTGTAGATAGAAAACCTCTCCTGGCATCTATTCAAAGTCACTTTGTCGCTCCAAATTCAACTTCCTTGGGTATGAACACTCCTGGTATTAATCGAAATGTTGCTGGTCAAATGGATGACTTTTTGTCTGGGGTTTATATTGCCTGTAGTAGGTCTGATACCCCAATGGTTGGTACCTTGGAGCTACCTATTCTGCCCGACACTATTTCTCCAGCATTTAATCAGGAATCTGCAGGTCGTGACAATAACCCTGCAGTTAACTCTGGCATGCGTAATCAAATTTCAGGACCAAACAATTTACCGATGCAGATGAATCATATGAATTCAGTTAACGAGTATGGTAGGTCGTCCTCGGTGCCAAGACATATTAATAGAACTCCAGTAGCTGTTCAGGCCCTCCCAGTCCAATCTCAGGCATCGGGAGATACTTTGAAAGCCATACTTAGTGATACTGAAAGACAGCAACGTTTTTCTCGATCCCCAATGAATCTGCCTCAGGTCTCAGGTGTGAATTCACCTGCATTTCGGCATCACAATGCAACACAGAGTCGGGTACCATTACAGAACCCGCCAACATCAACTCAATCGCAGAACCCATACAGACCTGGTTCGTTATCTGATTTTAGAAATTCACACCTGCAGCAATCTCTGAATATTCGGCCATCTCGACAGCATTCAAATTTCCGACCATCTACTACCCCATGGTCTCACATCCAGCAAAGTGTTCCACAATCTGGGAATTTACAGGCTGCAGGCATGGCTGCTCCACCGGCTGCCAGACAAGGTATTTCCAATGCTAGGAATGTTTCGCCAGCTGCTACCACTGCTCATAGCCAACAATCTAGGGGTTTGGCCGCTAATCAGCCTCCTAGATGGACACCACTAGTTCCGGTCCAAAATCAAAGCGGTGCTGCAGGCACACCTTTTGTAACTGACAGTTTCCAGGGAAGAGGAAACACAGCACATTCAGTCTCTAGGCCTGATGAATTATTCAGTACGCAACCAGAACAGAATTGGGCTCCCACTGGACGAATGCGTGGAAGTCTAGATTTAAGTCAGCCTTACGACGAATCTATTGCGCAGCGAATAATTACTCCAACACAAACCCAAGGTTCAAGACCACCACCTCCACAACCTCTCCGACGAGCCACTGGGTCGACCCAACAGGATGTGCTTATTGCTAACAATAGAAATGCAAATGCTCACAATCGTCCTTCCACTTGA	2535	0.4422	MNGAVGLPLPANSSPSVINMYRIQKVTERLAWLAQPGNRGDPKEFYNHCLSLSRGIDYALANGEIPSNAHELPLLVKQICQLKNDELSQAAMMVLMISVKGACEIGWFQTKESQELLTILDEIGKVYSSMGSINATSRQCSSEISTIMEKFYPHVKLGSILASIEIQPGYGASLVGFHITKSEFVKEKLFLLVAQIDNIEISACLISPPQANFLLNGKGIANRTYVEMDPGPQMPTDVTAMLKFGTNLLQAVGQFNGRYIVLVAYMSFTPLHEDPVLQDYLQPAVTSIDFDSDIVEGASQISLNCPISFTRIKTPVKGRSCKHFQCFDFNNFISINSKRPSWRCPHCNQYVCYADIRLDRNMVEILKNVGESITEVIVLADGSWKAVSEKDHDVDKMQKKAPNHEKEQTEPQEYTCSPATVDLTEDDDHVEAMDSSEIVDRKPLLASIQSHFVAPNSTSLGMNTPGINRNVAGQMDDFLSGVYIACSRSDTPMVGTLELPILPDTISPAFNQESAGRDNNPAVNSGMRNQISGPNNLPMQMNHMNSVNEYGRSSSVPRHINRTPVAVQALPVQSQASGDTLKAILSDTERQQRFSRSPMNLPQVSGVNSPAFRHHNATQSRVPLQNPPTSTQSQNPYRPGSLSDFRNSHLQQSLNIRPSRQHSNFRPSTTPWSHIQQSVPQSGNLQAAGMAAPPAARQGISNARNVSPAATTAHSQQSRGLAANQPPRWTPLVPVQNQSGAAGTPFVTDSFQGRGNTAHSVSRPDELFSTQPEQNWAPTGRMRGSLDLSQPYDESIAQRIITPTQTQGSRPPPPQPLRRATGSTQQDVLIANNRNANAHNRPST	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	590	787	-	-
	Vian10g00235	844	CDD	SP-RING_PIAS-like	302	349	-	-
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	819	844	-	-
	Vian10g00235	844	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	271	386	IPR013083	-
	Vian10g00235	844	PANTHER	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	31	411	-	-
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	590	685	-	-
	Vian10g00235	844	ProSiteProfiles	Zinc finger SP-RING-type profile.	290	371	IPR004181	GO:0008270
	Vian10g00235	844	SUPERFAMILY	RING/U-box	301	376	-	-
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	390	412	-	-
	Vian10g00235	844	Pfam	MIZ/SP-RING zinc finger	301	349	IPR004181	GO:0008270
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	800	844	-	-
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	700	778	-	-
	Vian10g00235	844	MobiDBLite	consensus disorder prediction	390	411	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian10g00235	K04706		-	gmx:100784204	1224.92

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian10g00235	10	2058766	2066550	Vian10g00235	10	2058766	2066550	ECH