Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00223 ATGCACTCTCTCTCTCCGACACACACCTTCCTACGCTCGCATTCACTCTCTTCCTTCACATCATCTTCTTTTCTTCTCCTTCTTCCTCCTTCCACTCTTCGCAGCTCTAAGAGGCTGCAATTCTCACCCTTCGTCACCTCTTCTCCAATTCCCCCAAATGAAACCAAATTCCGAACGCAGGGATTCTCTCATTCTTGCAAGAATTCCAACGATTCACCCGAATCACTTGCTCGAATCTCCAATTGGAAATTTCCCTTAGCTCCAATTGCTCATTCTAATTTATCCGTCAGGCTTCTCAAGTTTATGATGCTCTTCGGCTTCCTCACACTTAAACACTCATATCCCGCTCATGCTGCCTCTGACTTTTCCAGTGCTTTCAGTTTATCTCCTGCATTTGGGGATTTTGATGACATAAGCACAGGTTTTGCTTCAGCGTTTCTGCTGATATTTTTCTCTGAACTGGGAGATAAGACCTTTTTCATTGCAGCCCTGCTTGCAGCTAGGAATACAGCTGGTGTTGTTTTTATTGGGACGTTTAGCGCACTTGCGGCAATGACTCTGATCTCTGTTGTCCTTGGGAGAACTTTTCATTATGTTGATGAAATCTTGCCATTCAGGTTTGGAGAAACAGATTTACCTATTGATGATATTGCTGCTGTTTGCCTATTGGTGTACTTTGGGGTCTCTACCCTGCTGGATGCCTCATCTAGTGATGGCCAAAAATCAGATGAAGAGCAGAAGGAGGCAGAACTAGCAGTTTCTGAATTTTCTGGAAATGGTGCTGGAATACTATCTGCTGCTAGCACAGCTGCCAGTACTTTTCTCTTAGTTTTTGTCGCCGAATGGGGTGATAAGTCATTTTTTTCCACAATTGCCCTTGCAGCAGCTTCTTCTCCCCTTGGAGTCATAGCTGGAGCACTGGCGGGTCATGGTGTTGCAACTTTGCTAGCTGTACTCGGGGGCTCTTTACTTGGGACGTATTTATCAGAGAAGGTTATTTCCTACATCGGAGGTGTTCTATTTCTCGTCTTTGCTGCAGTAACCTTATTTGAAATTGTGCAATAG 1065 0.446 MHSLSPTHTFLRSHSLSSFTSSSFLLLLPPSTLRSSKRLQFSPFVTSSPIPPNETKFRTQGFSHSCKNSNDSPESLARISNWKFPLAPIAHSNLSVRLLKFMMLFGFLTLKHSYPAHAASDFSSAFSLSPAFGDFDDISTGFASAFLLIFFSELGDKTFFIAALLAARNTAGVVFIGTFSALAAMTLISVVLGRTFHYVDEILPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDGQKSDEEQKEAELAVSEFSGNGAGILSAASTAASTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGVATLLAVLGGSLLGTYLSEKVISYIGGVLFLVFAAVTLFEIVQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00223 354 ProSitePatterns Uncharacterized protein family UPF0016 signature. 153 162 IPR001727 -
Vian10g00223 354 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 137 350 IPR001727 -
Vian10g00223 354 Pfam Uncharacterized protein family UPF0016 144 227 IPR001727 -
Vian10g00223 354 Pfam Uncharacterized protein family UPF0016 272 345 IPR001727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00223 Vian-Chr10 1962493 1967261 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00223 - - gmx:100809618 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00223 10 1962493 1967261 Vian10g00223 10 1962493 1967261 ECH