Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00213 ATGTCTTCATCGAAAGAGGCGGACCCAACCCTGGGTTACCTCACTCGGAAGGACACGGAGGTGAAGCTTCCGCGTCCAACCAGGGTCAAGAATAAAACCCCCGCTCCAATCCAAATCACCGCCGAGCAAATTCTCCGGGAGGCTAGGGAGCGTCAAGAGGCGGAGATCCGCCCTCCTAAGCAGAAAATCACCGACTCTACCGAGCTTGGCGAGTACCGTCTTCGCAAGCGCAAAGAGTTCGAGGACCTTATCCGCCGTGTTCGATGGAACATTGGCGTGTGGATCAAGTATGCGCAGTGGGAGGAATCGCAGAAGGACTTCAAACGGGCGCGTTCCGTTTGGGAGAGAGCGCTGGAGGTGGATTACAAGAATCACACGCTCTGGCTCAAGTACGCGGAGGTCGAGATGAAGAACAAGTTCATAAACCACGCGCGCAACGTGTGGGACCGCGCCGTGACCCTTCTGCCGAGGGTGGATCAGCTGTGGTATAAGTACATTCACATGGAGGAGATGCTAGGCAATGTCGCCGGCGCGAGGCAGGTTTTCGAGAGGTGGATGAAATGGACACCGGACCAGCAGGGATGGCTGTCCTACATAAAGTTTGAGCTTAGGTACAACGAAATTGAGCGCGCCAGAGGGATTTTCGAGCGATTCGTTGAGTGCCACCCTCGAGTTGGGGCTTGGATACGCTATGCCAAGTTTGAGATGAAGAATGGCGAGGTTGGGAAGGCTAGAACCGTGTACGAGAGAGCCGTGGATAGGCTATCTGATGATGAGGAAGCAGAGCAGTTATTTGTTGCTTTTGCGGAGTTTGAGGAAAGGTGTAAGGAGACTGAGCGTGCAAGAGCTATCTATAAGTTTTCCCTGGATCATATTCCCAAGGGAAGGGCGGAAGATTTGTATAGAAAATTTGTGGCATTTGAGAAGCAGTATGGGGACAGGGAAGGGATAGAGGATGCCATCGTTGGGAAGAGAAGGTTTCAGTATGAGGACGAAGTGAGGAAGAATCCGTTGAATTATGATTCCTGGTTTGACTACATAAGGTTGGAGGAAAGTGTGGGGAATAAGGAAAGGATCAGGGAGGTTTATGAGAGGGCTATAGCCAATGTCCCCCCGGCGGAGGAGAAGCGCTACTGGCAGCGCTACATTTATTTGTGGATTAATTATGCACTCTATGAAGAGCTCGATGCTGGGGATGCGGAGCGAACTAGGGATGTATACAGGGAGTGCATCAACCTTATACCTCACAATAAGTTTTCGTTTGCAAAAATATGGCTTCTAGCAGCTCAATTTGAAATACGTCAACTGAATCTCAAGGCTGCTCGACAAATATTAGGAAATGCCATTGGAAAGGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAAATAGAACTGCAACTTGGTAATATTGACCGGTGCAGAAAATTATATGAAAAATATCTGGAGTGGTCTCCAGAAAATTGTTATGCTTGGAGCAAGTATGCTGAGTTGGAGAGATCGTTATCTGAGACAGAACGAGCCCGAGGAATTTTTGAGCTTGCAATTGCCCAACCAGCGTTGGACATGCCTGAGCTCTTGTGGAAGGCATTCATTGACTTTGAGACTGCTGAGGGTGAATTTGATAGAGCAAGAGCACTTTATGAAAGGCTTCTTGACAGAACAAAGCACTTGAAGGTATGGATAAGCTACGCTGAATTTGAGGCAACAGCTATGGATGTGGACAATGAAGACTTGACGGAACATGAACAAAAGAAGCAATGCATTGAGCGTGCTAGAAGGGTGTTTGAGAAGGCTCTCAACTACTTCAGATCATCTGCTCCAGATTTGAAAGAAGAAAGGGCAATGTTATTGGAAAAATGGCTCAACATGGAGAGTACATTTGGAGAGCTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAAAAGAGAAGGCACGTTGCCACTGAAGATGGTTCTACTAGAATTGAAGAATTTATCGACTTTTTGTTCCCTGAAGAAAGCCAGACAACTAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAGTTGTCTTCCGATGATTAA 2088 0.4737 MSSSKEADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNIGVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWTPDQQGWLSYIKFELRYNEIERARGIFERFVECHPRVGAWIRYAKFEMKNGEVGKARTVYERAVDRLSDDEEAEQLFVAFAEFEERCKETERARAIYKFSLDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDAERTRDVYRECINLIPHNKFSFAKIWLLAAQFEIRQLNLKAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETERARGIFELAIAQPALDMPELLWKAFIDFETAEGEFDRARALYERLLDRTKHLKVWISYAEFEATAMDVDNEDLTEHEQKKQCIERARRVFEKALNYFRSSAPDLKEERAMLLEKWLNMESTFGELGDVSLVQSKLPKKLKKRRHVATEDGSTRIEEFIDFLFPEESQTTNLKILEAAYKWKKQKLSSDD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00213 695 Gene3D Tetratricopeptide repeat domain 537 667 IPR011990 GO:0005515
Vian10g00213 695 Pfam Tetratricopeptide repeat 466 488 IPR019734 GO:0005515
Vian10g00213 695 FunFam Crooked neck pre-mRNA-splicing factor 1 329 481 - -
Vian10g00213 695 Gene3D Tetratricopeptide repeat domain 121 320 IPR011990 GO:0005515
Vian10g00213 695 Gene3D Tetratricopeptide repeat domain 321 535 IPR011990 GO:0005515
Vian10g00213 695 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Vian10g00213 695 PANTHER PRE-MRNA SPLICING FACTOR 24 690 IPR045075 GO:0000398
Vian10g00213 695 SUPERFAMILY TPR-like 81 203 IPR011990 GO:0005515
Vian10g00213 695 SMART hat_new_1 398 434 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 276 310 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 239 274 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 320 352 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 206 237 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 71 103 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 105 137 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 436 467 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 539 570 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 469 501 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 354 388 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 587 620 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 139 171 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 173 204 IPR003107 GO:0006396
Vian10g00213 695 SMART hat_new_1 503 537 IPR003107 GO:0006396
Vian10g00213 695 Coils Coil 534 554 - -
Vian10g00213 695 MobiDBLite consensus disorder prediction 11 27 - -
Vian10g00213 695 FunFam Cell cycle control protein cwf4 482 678 - -
Vian10g00213 695 FunFam Cell cycle control protein 121 325 - -
Vian10g00213 695 SUPERFAMILY TPR-like 194 258 IPR011990 GO:0005515
Vian10g00213 695 MobiDBLite consensus disorder prediction 1 35 - -
Vian10g00213 695 SUPERFAMILY TPR-like 268 523 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00213 Vian-Chr10 1865088 1868553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00213 K12869 - gmx:100811745 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00213 10 1865088 1868553 Vian10g00213 10 1865088 1868553 ECH