Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00031 ATGGAGGGAACCGAAGCCGCAGCGAATGGTGATGGCGACGGAGATGGTGGCGATCGTCCATGGCAATCTTACCACACTGTTTACACAACCGCTAAAGCAGGAATGGAAGGGGTTGACAAGGAGAAAGTTCAGAGAGTAGTTTACGAAATGAGTAAAGGATCCAAATATTTTCAAAACGAGGAACGCAAGGAGGCTTTTATTAACCAGAAAATTCAGAACTTGCGAATTCAGTGTACTAAGCTCACACAAGCAGACCTGGCCCACTATCGCAAGGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCGCGTGACCTTTCGAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCAGTGGAGACTTTAAGTAATCCTACATTACAGGGCAAGCCAATGGCTGTTGGGAGCATGTCCATGATATCCACTGCCAACTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACAGATTTCAAGAAGTATACTTACTATAGTGATTTGACTAGAAAAGTTTTCCGGATATACGACCCCAATTTCATTGCTGGTAGCCTGGACGAAGCATACCTTGATATAACTGAAGTTATCAAAGAAAGGAATGTCAAAAGTGAAGAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACCGGTCTCACATGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCCAAGGTTTGTTCAGACATAAACAAGCCAAATGGACACTATATTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACAGAACATATTTTAAAGGGAGTTTTTGAAATTAACACATGTGAGCAGATACTGGAGAAGAGTAGCTACCTTTATGCACTTTTCTCTCAGCCAACAGCAGAATTTTTTTGCTCTGTAGGTTTAGGTCTTGGGCAGACAGATTCTCCCCAAGTAAGATTTCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACTGAAGATGAGGTGCTATTGCATAAAAAATTAGTGGAGCTTGCTGAAATGCTATCGGCTGACATGCAGAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACCAGAGCTGTGACTTTACAAAAGTACATCAGCTCAACTGAGGATATCTTGAACCATGCTAAAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGATAGGCCTTAGAGTATCTCAGTTTAATGGAGACAAATGTAGTGCTACGCCTGATCCTACACAGAAGACCATTACCAACTTCATTACTTCGGGAGATGTCAATAGAAATTGTAGTTCTTTTCCAGATGTTGCAGATCGTGACTTTGTCAGTGATGCAGAAACCAATCTTTCTGTTGACATTCAGCAGACGAGTCAACTTGATTGGAAAGATCCTTTTGTTGGTAACTATTTGTCAGATGGAGATTACCAAAGCTGTATTCTCCGGAAAAATGATGGTATAGAAGAGGTACAAACACCTAGTAATGATGCTACAAGTTCTCACCACAGTGGATTTACAGAAGCGCTGGGATCTACTTTCCAGGAGCAGTTTGAAGGCATAAATGTGCTGAATGAATCTAAGTTCCTGGAGAGTGCGAGGCTTAATTCTTGTTCTCAGGAGATGACAATGTTGTGGCTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTACCTCCAAGTTTTGTTGAGGAACGATTGGAGCACTCTGATTTTCATCTTGCCGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAACCATGTGTTCCTAGTGGAAGTCGGAGTCAAAAGGATGGAATCACTATACAAAGCAAATCTAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCAAATTTATACCCATTGATTCCTTTTTTGTTAAAAAGTAA 2013 0.4153 MEGTEAAANGDGDGDGGDRPWQSYHTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEAFINQKIQNLRIQCTKLTQADLAHYRKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLQGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFRIYDPNFIAGSLDEAYLDITEVIKERNVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGHYILPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFEINTCEQILEKSSYLYALFSQPTAEFFCSVGLGLGQTDSPQVRFRKSISNERTFSATEDEVLLHKKLVELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSTEDILNHAKKLLKAELPISVRLIGLRVSQFNGDKCSATPDPTQKTITNFITSGDVNRNCSSFPDVADRDFVSDAETNLSVDIQQTSQLDWKDPFVGNYLSDGDYQSCILRKNDGIEEVQTPSNDATSSHHSGFTEALGSTFQEQFEGINVLNESKFLESARLNSCSQEMTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESRIHQPCVPSGSRSQKDGITIQSKSKKQKLSQKEGKFIPIDSFFVKK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00031 670 Pfam impB/mucB/samB family C-terminal domain 346 446 IPR017961 GO:0003684|GO:0006281
Vian10g00031 670 PIRSF DNA_pol_eta 486 670 - -
Vian10g00031 670 PIRSF DNA_pol_eta 221 467 - -
Vian10g00031 670 PIRSF DNA_pol_eta 102 224 - -
Vian10g00031 670 Gene3D - 267 339 - -
Vian10g00031 670 MobiDBLite consensus disorder prediction 1 22 - -
Vian10g00031 670 SUPERFAMILY DNA/RNA polymerases 85 337 IPR043502 -
Vian10g00031 670 Coils Coil 57 77 - -
Vian10g00031 670 Gene3D - 28 114 - -
Vian10g00031 670 Gene3D - 115 266 IPR043128 -
Vian10g00031 670 FunFam DNA polymerase kappa subunit 27 117 - -
Vian10g00031 670 ProSiteProfiles UmuC domain profile. 110 290 IPR001126 GO:0006281
Vian10g00031 670 CDD PolY_Pol_IV_kappa 111 443 IPR022880 GO:0003887
Vian10g00031 670 FunFam Polymerase (DNA directed) kappa 120 172 - -
Vian10g00031 670 MobiDBLite consensus disorder prediction 624 656 - -
Vian10g00031 670 FunFam DNA polymerase kappa subunit 170 265 - -
Vian10g00031 670 Gene3D - 127 175 - -
Vian10g00031 670 Gene3D - 344 449 IPR036775 GO:0003684|GO:0006281
Vian10g00031 670 ProSiteProfiles Zinc finger UBZ3-type profile. 585 622 IPR041298 -
Vian10g00031 670 FunFam DNA polymerase IV 343 450 - -
Vian10g00031 670 FunFam DNA polymerase kappa 251 339 - -
Vian10g00031 670 Hamap DNA polymerase IV [dinB]. 107 459 IPR022880 GO:0003887
Vian10g00031 670 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 344 441 IPR036775 GO:0003684|GO:0006281
Vian10g00031 670 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 21 667 - -
Vian10g00031 670 Pfam Ubiquitin-Binding Zinc Finger 589 622 IPR041298 -
Vian10g00031 670 Pfam impB/mucB/samB family 113 257 IPR001126 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00031 Vian-Chr10 248089 252078 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00031 K03511 - gmx:100816973 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00031 10 248089 252078 Vian10g00031 10 248089 252078 ECH