Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00029 ATGGATATAAGTATGTTATTGTTGAAATCAGAATTAAATATTAAAAGAATAACATTTTATAAGCGGAGGATGGGTATCCGATCGCGAGAAAGTGGAGAATGGGATTGGGAGAAACAAGTGCCCTCGCTGCCATCTTCAGCGTACTCTGTCCTTCGTTCCAACTTCGGAGGAACGAAACCTCTCTCTTCTTCTCTTCACTCCGTTTTCCACTCTTCCGACAACCTCACCTCCAAGCTCCTCATCAAGCTCCACAACGGAGAATTCGTGGAGGCTGTGATAATGAGATACGATACTCGTTTGGGCAAATACGCTGGCAAACCGCGTCCCGGTGGGCTACGAGCAACTTTGTGTATTTCATCTCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCCACTGGATCCATGGGATTCAAAAATAACCTATCCTCCGGGGAAATTGTGGAGCAGCTCGTCCATGCTTCTGCTTTCTCACAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCGGTTCGCATCATGACTGGATTGCCATTTCAGTTGTCCTTGAAAAGAATTACCGTGTCAACGGTTGGTATCATCCATGCTATCAACAAGCTTCACAATGACCTGCCTGGTTTGAACTTGGCAGTCTCTCTGCATGCACCGGCCCAAGACATTCGTTGTCAGATAATGCCTGCTGCTCGTGCTTTTCCTTTGGAAAAACTTATGAATTCACTGCAAGAATATCAAAGAAAAAGTCTGCAGAAAATACTGATTGAATACATAATGCTTGACGGGGTGAATGATGGAGAGCAGCATGCCCACCAATTGGGAAAACTATTAGAGACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACCCTATCGGTACCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAAGTCTCAAATTTTCAGAAAATTCTCAGAGGTACATATAATATTCGAACAACAGTTAGGAAGCAGATGGGTCAAGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATACCAGACAAGTCTCTTGCCCGTGCAGAACCCCTCACAGACATAGAAGATCTTGTTATTTGA 1113 0.4385 MDISMLLLKSELNIKRITFYKRRMGIRSRESGEWDWEKQVPSLPSSAYSVLRSNFGGTKPLSSSLHSVFHSSDNLTSKLLIKLHNGEFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDGEQHAHQLGKLLETFQVVVNLIPFNPIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDKSLARAEPLTDIEDLVI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00029 370 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 66 347 IPR027492 GO:0030488|GO:0070475
Vian10g00029 370 Pfam Radical SAM superfamily 119 276 IPR007197 GO:0003824|GO:0051536
Vian10g00029 370 FunFam 23S rRNA methyltransferase 63 354 - -
Vian10g00029 370 Pfam 4Fe-4S single cluster domain 123 207 - -
Vian10g00029 370 CDD Radical_SAM 123 324 - -
Vian10g00029 370 ProSiteProfiles Radical SAM core domain profile. 110 339 IPR007197 GO:0003824|GO:0051536
Vian10g00029 370 PIRSF Cfr 30 363 IPR004383 GO:0006364|GO:0008173
Vian10g00029 370 SFLD adenosine C2 methyltransferase (RlmN-like) 70 354 IPR004383 GO:0006364|GO:0008173
Vian10g00029 370 PANTHER 23S RRNA METHYLTRANSFERASE 35 355 IPR040072 -
Vian10g00029 370 SUPERFAMILY Radical SAM enzymes 115 314 - -
Vian10g00029 370 SFLD methyltransferase (Class A) 70 354 - -
Vian10g00029 370 Gene3D Aldolase class I 64 355 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00029 Vian-Chr10 240609 243429 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00029 - - tpra:123909522 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00029 10 240609 243429 Vian10g00029 10 240609 243429 ECH