Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00025 ATGGCTTCCTCTTCTTCTGCTCCGGAAGGTTTAGGGTTATCGCAAGAAGACTACGACCTGATGTATGGGTCTGAATCCGGATGGGTGGAGGCTCGATCTTCGTGCGATCATCTTGCCTCCTTATCCGCCGATCTCAGCCACATTCCGCCTCCCGGCACACCCTGCCACACCTGCCAACACCCCTCCGAAAACTGGCTCTGCCTCTCCTGCAAGCAGGTCCTCTGTGGCCGTTTCGTCAACAAGCACATGCTCCACCACTTCCACCACACTAATCACTCTCTCGCCCTCAGTTTCAGGTACGCATTATTAGTGATCTCTCATGCATTCCCTTTTTCCTTCATGCACTCCCTCATCCATTCCTCCACTTTCTCGATCAGTGATCTCTCCTTCTGGTGTTTCTCCTGCGACGCTTACTTGGATGCCCAACTCATTCCCCAACTGCGCCCTGTTCATCAACTAGCTTACATCATCAAATTCGGCGAGCCTCCACCACTCCCTCTTATTCAACATCAACCTTCCTCTGCCACCTCGGATTAG 537 0.527 MASSSSAPEGLGLSQEDYDLMYGSESGWVEARSSCDHLASLSADLSHIPPPGTPCHTCQHPSENWLCLSCKQVLCGRFVNKHMLHHFHHTNHSLALSFRYALLVISHAFPFSFMHSLIHSSTFSISDLSFWCFSCDAYLDAQLIPQLRPVHQLAYIIKFGEPPPLPLIQHQPSSATSD 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00025 178 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 3 176 - -
Vian10g00025 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 162 IPR013083 -
Vian10g00025 178 Pfam Zn-finger in ubiquitin-hydrolases and other protein 55 140 IPR001607 GO:0008270
Vian10g00025 178 SUPERFAMILY RING/U-box 33 150 - -
Vian10g00025 178 ProSiteProfiles Zinc finger UBP-type profile. 33 161 IPR001607 GO:0008270
Vian10g00025 178 SMART Zf_UBP_1 54 103 IPR001607 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00025 - - aprc:113869857 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00025 10 223737 224350 Vian10g00025 10 223737 224350 ECH