Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00022 ATGGGGTGGGAGAAGGAAGTATTAAGAAGGCAGATGATGATGGTGGAAAAGCATGTGGAAGTATGCATGAGAAGAATATATGAATGGGGGAAAAAAGGGCTAAGTGTGGGTCATGGGGGAGCATGTGTGATTTGTACTCCAAGTTCAGGGCTGTGGCAAAAGCCAAGGACTGATAGTGTGGCTATGGCTGTGGCTATGTCTCTGTCTTTCGGGCTCTTGTCTTCCTCCGTTCTCCTTCCAGAGGCCCACGCTCTGAGCTTCACGAGGCCTTCGCGTTCTGCTTCTGCTTCTCCACTGCGCATGGTGCGAACCGTTATCTCTTGCAAGGTCTCTGAGTCCGACAAAGGAACCCGCAAAATCCGTGGCATCATGAAACCCCGCGATGTCACCCCTGAAATGGCAGCCCTCGTCGGCGCTCAACAGATTTCCAGAACCCAAGCCCTCAAACTCATTTGGGCTTATATCAAGGCCAACAATCTTCAGGACCCTGAAGACAAGAGGACTATAATTTGTGATGAGAAGCTGAAGAAGATATTTGAAGAGAGAGATCGAGTTGGTATGCTAGAGGTTGCTCGCTTGATTAGCCCTCACTTCCTTAAAACTGAAGTTTAA 612 0.4902 MGWEKEVLRRQMMMVEKHVEVCMRRIYEWGKKGLSVGHGGACVICTPSSGLWQKPRTDSVAMAVAMSLSFGLLSSSVLLPEAHALSFTRPSRSASASPLRMVRTVISCKVSESDKGTRKIRGIMKPRDVTPEMAALVGAQQISRTQALKLIWAYIKANNLQDPEDKRTIICDEKLKKIFEERDRVGMLEVARLISPHFLKTEV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00022 203 CDD SWIB-MDM2_like 129 198 - -
Vian10g00022 203 Gene3D SWIB/MDM2 domain 117 203 IPR036885 -
Vian10g00022 203 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 112 200 - -
Vian10g00022 203 SUPERFAMILY SWIB/MDM2 domain 117 200 IPR036885 -
Vian10g00022 203 ProSiteProfiles SWIB/MDM2 domain profile. 122 200 IPR003121 -
Vian10g00022 203 SMART swib_2 123 203 IPR019835 -
Vian10g00022 203 Pfam SWIB/MDM2 domain 125 198 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00022 Vian-Chr10 205029 208994 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian10g00022 SWIB 6.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00022 - - var:108333445 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00022 10 205029 208994 Vian10g00022 10 205029 208994 ECH