Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00015 ATGAGATTGGCGATGGCGGCACAAGCAGAATGGATGTTCAGAGCGTTGAGGAGTGGTCGGCGGTACTTGTCGGCGGGAAGGCAGCGGGAGGAGAAATGGCTTACGCTGCCTCCCGTGGCTGCGAGTGCCACCGTGGAGGTGAATGGAAAGAGAAAGGGAAAGGGAAACCAACTCTCCTCCACTTCCACCACTGCGCTCAAATGGATTGTTCGCTGCTGCCCAAACCTCCCCATATCCCTTCTGCACAAGCTTTTCCGTCTGAGACAAGTTCGACTTCTCTCTCCTCCTCACATGGACATGCAACAGCAAACACTCAAAAGGGTGGCAGCTAAGTACACCTTGAACGCTGGAGATCGGATTTTACTTCCTCAATCTGTTCAACAAAAACCAACGCCTACGCACAAACCTCATTCTCCTCTCACTCCCCAACAAATCAACTTCATTCGCACTCTTGTTATATACAAGGATCCTGCCATTCTCGTCCTCAACAAACCTCCAGGAATGCCTGTGCAGGGTGGCATTAATATCAAACACAGTTTAGATGTGGTTGCTGCTGCATGTTTAAATTATGAATACTCTGAACCCCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGCATTCTGGTGATGGGAAGAACACAGACAAGTACTACAGTTCTGCATTCCATCTTTCGGGAGAAAACATCTAGGGCATTAGATGATATTGGCGAAGAGAAGAGGATACTACAAAGAAGGTATTGGGCACTTGTCCTTGGATGTCCTAGACGTTCAAAGGGGTTGGTCACTGCTTCACTGGGTAAGGTGGTTGTTGACAATGGGAAATCTGAACGAATAACTGTGGTTGACAATTCTGCATCATTGTCATCACAGCATGCAATTACAGAGTACCGAGTGATTGCATCATCATCACAAGGTTACACATGGTTGGAGCTGTCCCCTTTAACTGGTAGAAAACACCAGCTTCGAGTGCACTGTGCCGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCACAGGAAGTGGGGAGGTTTTGATTTGTCAAATGTGGAGGACTCATGTGAAGAGCTTCTCAAGGAAGAAACACTCCCCTTTGGCCTTAATTTGAACAATGGGAGCATCTCTGAGAACCATCCTCGTTTACATCTTCATTGCAAGCAAATAGTCTTACCCAATATATCTCAAGCACTGCAAAATGTGCAATCATTTTCCAATTGTGATCTTTCACAAGTGGAAGGGCTTGAATTGGTCGCGGATTTGCCTCCATACATGCAAAGAAGTTGGGATGTCACAAATTGTTGA 1323 0.4679 MRLAMAAQAEWMFRALRSGRRYLSAGRQREEKWLTLPPVAASATVEVNGKRKGKGNQLSSTSTTALKWIVRCCPNLPISLLHKLFRLRQVRLLSPPHMDMQQQTLKRVAAKYTLNAGDRILLPQSVQQKPTPTHKPHSPLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSRALDDIGEEKRILQRRYWALVLGCPRRSKGLVTASLGKVVVDNGKSERITVVDNSASLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGGFDLSNVEDSCEELLKEETLPFGLNLNNGSISENHPRLHLHCKQIVLPNISQALQNVQSFSNCDLSQVEGLELVADLPPYMQRSWDVTNC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00015 440 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 52 437 - -
Vian10g00015 440 Gene3D Pseudouridine synthase 143 409 - -
Vian10g00015 440 SUPERFAMILY Pseudouridine synthase 147 399 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vian10g00015 440 CDD PseudoU_synth_RluA_like 159 350 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vian10g00015 440 Pfam RNA pseudouridylate synthase 159 328 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00015 Vian-Chr10 155901 159760 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00015 - - gmx:100779473 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00015 10 155901 159760 Vian10g00015 10 155901 159760 ECH