Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00013 ATGTCGATTTCGGGCATCCAGGGGCAGCCTCTTGAGGTTACGGTGGTGTCGTGCTCCAAGCTGAAGGACACAGAATGGATTTCACGGCAAGATCCGTACGTTTGCATTGAGTATGGCAGCACCAAGTTCCGCACCAGAACCTGCACCGACGGCGGTAAGAACCCCGTCTTTCAGGAGAAGTTCGTCTTTCCCCTCATCGAAGGCCTTCGGGAGATCAACGTCCTTGTTTGGAACAGCAACACTCTCACCTTCGACGATTTCATCGGAAGCGGAAAGATTCAGCTGCACAAGGTTCTCTCTCAAGGCTTCGACGACTCTGCTTGGCCACTTCAGACCAAATCTGGCAGACATTCTGGCGAAGTCAAAGTCATTCTGCACTATGCAATTGCAAATCAAAAGCAGAAATTAGCCTCGGGCCACTCTCCATCTGCACCTCCCTATATGTCAACGGCAACTCCTCCATTCCCTTCTTATTCTAATCCTTCTCCTGCATCCTCTTACCCACCACCTCCTCATTCTACTTCCTCCTATCCACCACATCCCTCTGCAACTCCTTACCTTACAACTGGATCATACCCACCGGTGGCATCCACAGCCTCATACCCACCGGTAGCATCCACAGCCTCATACCCACCGCCTCCCACAGCTTACCCACCCCATCCCTCACATTCATCTCCCTATCCACAGCAATCCTACCCTGCATCATCTCCCTATCCACCCTCCTCGTATCCTCCTCCACACTCCTATCCGCCTGCTTCAGCTTATCCACCATCTTCGTATCCACCGCCTACAGGTTACACTCCTGGAATATACCCTCCACCGCCATACTGA 831 0.5247 MSISGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCIEYGSTKFRTRTCTDGGKNPVFQEKFVFPLIEGLREINVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKSGRHSGEVKVILHYAIANQKQKLASGHSPSAPPYMSTATPPFPSYSNPSPASSYPPPPHSTSSYPPHPSATPYLTTGSYPPVASTASYPPVASTASYPPPPTAYPPHPSHSSPYPQQSYPASSPYPPSSYPPPHSYPPASAYPPSSYPPPTGYTPGIYPPPPY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00013 276 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 4 276 - -
Vian10g00013 276 MobiDBLite consensus disorder prediction 206 245 - -
Vian10g00013 276 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Vian10g00013 276 MobiDBLite consensus disorder prediction 203 245 - -
Vian10g00013 276 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 127 IPR035892 -
Vian10g00013 276 CDD C2 11 108 - -
Vian10g00013 276 Gene3D C2 domain 9 128 IPR035892 -
Vian10g00013 276 PRINTS Proline rich extensin signature 179 195 - -
Vian10g00013 276 PRINTS Proline rich extensin signature 158 179 - -
Vian10g00013 276 PRINTS Proline rich extensin signature 219 244 - -
Vian10g00013 276 PRINTS Proline rich extensin signature 201 218 - -
Vian10g00013 276 PRINTS Proline rich extensin signature 142 154 - -
Vian10g00013 276 MobiDBLite consensus disorder prediction 136 189 - -
Vian10g00013 276 SMART C2_3c 10 107 IPR000008 -
Vian10g00013 276 Pfam C2 domain 11 101 IPR000008 -
Vian10g00013 276 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00013 Vian-Chr10 140164 141509 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00013 - - vra:106777522 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00013 10 140164 141509 Vian10g00013 10 140164 141509 ECH