Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03024 ATGGTGAAACTAGCTTCAGCAAGAGAATTTCGTACATACGGATCAGGCCTAACAAAAAACCGTTACGAATATATTAACGCCGGTCTTTATCTTTTTGCAACCGTTGTTCTCTGTTCTGGTTTTGTTTCTCAGCTTTCTTCTGAAGCCCGTTCGGGTCTTGTGGTTATTCTTATTGCTCTTGcaattattgttattgttaatctTCATGATATGCTTGCTCATTTTGCTGGCATTGATTTTCGATTATCTTTGATGTCTTTTGATCTTCAACTCTTTTTTGTTGAGTTTGCTGCTCCTGTTGTTCAGATCCTTGGAACTATTCTTCTTTCTCTAgcaattttattcattttcattcaGGAAGAGAAAGGATATGGTATTTGGAAATTGGAAAAACATGCTATGAACATGTTAGTTGCTGGTCCTGTATTGTGGGTGGTAGGATCGATTCATAATTCGTGCCAAATCTATGAGAGAGCGGATGGTCATGTCCAAATTTTGCAGCAGTTTGTGTATATCCCTTTTTTGATGGGGAGTTTATCGTTCATGCTTGGTGCAATTCTTAATTATCGTCAACAATCTAAAGTGTTCAACCACGGCCTCCACTTGCTTGGTGAGACTTGGATTTGGCTAGGCATATTTGGAAGCTTATTGTTCTTTATCGGTGGATTGACAAATGTAATAAAAGTGTTCAAGATGCAACAAATGAATGGAATGATGAGGTTGGAGAAACTGCGAGGTGGAGCACAAGAGAGGTTGGTAAGTGCAAGGGAAGGAAGGGTTCCCTTGATTTTGGATCATCATCAACCTATAATTAACCATCAAACTAAAATTAACCGCCAGTTGCCCGAAGAGACTAAAGTTGATATACCCCTTCCTACTCCTTATAAGGATGTCCTTGTTGGTTTAAGGTTATTGTCTGAAATGGCATCGGTCTCTAGTCAGCAACAGTTTCGGTACACCCAACCACCATCGAAGGTGCTTCACTTGAGAAACTTGCCATGGGAATGTACGGAGGAGGAATTGATTGAACTCGGGAAGCCATTTGGCAATGTTGTGAACACAAAATGCAATGTTGGGTCGAACCGAAATCAAGCTTTTATTGAATTTGCAGATTTGAATCAAGCCATTGCAATGATATCTTACTATGCCTCATCGTCGGAGCCTGCACAAGTGCGAGGGAAAACTGTATATCTGCAATATTCAAATAGGCAAGAAATAGTGCATAACAAAACTGCTGCAGATGTTGCTGGCAATGTATTGTTAGTAACGATTGAGGGTGAAGATGCACGCCTTGTCAGCATTGATGTCTTGCACTTGGTCTTTTCAGCCTTTGGATTTGTCCATAAGATTACTACTTTTGAGAAGACAGCGGGATTCCAGGCACTGGTTCAATTCTCAGATGCAGAGACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCCAgGTATCTTCTCCCCGAAAATGTGGGACCATGTACCCTGAAGATCACATATTCTGGACATTCAGACTTAACAGTGAAGTTTCAAAGTCACAGGAGCAGAGACTATACCAATCCTTACCTTCCTGTTGCTCAATCAGCCATTGAGGGAGGTGGACAGGTCATGGTTGGTTTGGACGGGAAAAGACTGGAGACTGAGAGTAACGTTCTTCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACATATGgTTTTCTCTGCTTTTGGGCCAATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTGCAAGCTTTGATTCAATATCCAGATACTCAGACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATATATGATGGAGGATTTTGCAAGCTTCACCTCTCGTATTCACGTCATACAGATCTTAGTATAAAGGTCAACAATGATAGGAGTAGAGACTATACCATTCCTCTAATACCTGTTGTGAACACTCAGCCCTCAATTCTAGGGCAACCTGTTCCCATGATGGTTCCTCCTGATCAGCAATACAATGTGTCTCAGTATACTCCAATTTCCGACCCTGCTATGATACCTCAATCTCAGGCAGGATGGGGAACAGCTCCACCAGCAGTTGCTCAATCTATGCCACTACAGATGCACAATAATGTTTACATGCCACCTGGAAATGTACCACCACAAGTGCCACCTGGAAATGTACCACCACAAATGCCGCCTGGATACATGCCACCGGGAATGCAATTTTCAAATCCCGGCACGCTACAACCGGCATCCACATTGCCTGCATATGGATCTGATCGCATTCAATAA 2301 0.4159 MVKLASAREFRTYGSGLTKNRYEYINAGLYLFATVVLCSGFVSQLSSEARSGLVVILIALAIIVIVNLHDMLAHFAGIDFRLSLMSFDLQLFFVEFAAPVVQILGTILLSLAILFIFIQEEKGYGIWKLEKHAMNMLVAGPVLWVVGSIHNSCQIYERADGHVQILQQFVYIPFLMGSLSFMLGAILNYRQQSKVFNHGLHLLGETWIWLGIFGSLLFFIGGLTNVIKVFKMQQMNGMMRLEKLRGGAQERLVSAREGRVPLILDHHQPIINHQTKINRQLPEETKVDIPLPTPYKDVLVGLRLLSEMASVSSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGNVVNTKCNVGSNRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVHNKTAADVAGNVLLVTIEGEDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPENVGPCTLKITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAIEGGGQVMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPLIPVVNTQPSILGQPVPMMVPPDQQYNVSQYTPISDPAMIPQSQAGWGTAPPAVAQSMPLQMHNNVYMPPGNVPPQVPPGNVPPQMPPGYMPPGMQFSNPGTLQPASTLPAYGSDRIQ 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03024 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 416 483 - -
Tsu08g03024 766 Gene3D - 310 418 IPR012677 -
Tsu08g03024 766 MobiDBLite consensus disorder prediction 729 766 - -
Tsu08g03024 766 MobiDBLite consensus disorder prediction 745 759 - -
Tsu08g03024 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 403 IPR000504 GO:0003723
Tsu08g03024 766 CDD RRM1_PTBPH1_PTBPH2 323 403 IPR034792 -
Tsu08g03024 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 380 IPR000504 GO:0003723
Tsu08g03024 766 SUPERFAMILY RNA-binding domain, RBD 432 525 IPR035979 GO:0003676
Tsu08g03024 766 SMART rrm1_1 326 399 IPR000504 GO:0003723
Tsu08g03024 766 SMART rrm1_1 554 624 IPR000504 GO:0003723
Tsu08g03024 766 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 308 740 - -
Tsu08g03024 766 CDD RRM3_PTBPH1_PTBPH2 550 646 IPR034794 -
Tsu08g03024 766 Gene3D - 549 654 IPR012677 -
Tsu08g03024 766 Gene3D - 419 529 IPR012677 -
Tsu08g03024 766 Pfam RRM-like domain 550 628 IPR021790 -
Tsu08g03024 766 CDD RRM2_PTBPH1_PTBPH2 417 511 IPR034793 -
Tsu08g03024 766 SUPERFAMILY RNA-binding domain, RBD 314 407 IPR035979 GO:0003676
Tsu08g03024 766 SUPERFAMILY RNA-binding domain, RBD 557 648 IPR035979 GO:0003676
Tsu08g03024 766 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 308 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03024 Tsu-Chr8 46030758 46071084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03024 K14948 - vvi:100855089 1027.7