Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03022 ATGGGAGTTGTGACAGTTTCTAGCTCAGCTGCTCGATCTCCACTTGGATTGAATACGAAGTTTTCTAGTCACAATTCTGTATTGAAGAGACCGATAATTGTAGCATTTAAAGGAGATAAACAGAATGACACAGCTTTGGTTACAACTCAAGAGAAAATTCCGACGCAAGTTAAAACAAAGACGCACAAAAAAAGGATAGCGAAAACGAATAAACTACctaagaaagaaaaagctgTATTCACTGAGGAAACTTTTCCTTCTTCGTTGGATGTGGACTACAACGAAGCTGCTGCTATACTTGAAAATATATACAAACTTAGTCCGCCATCCGATGCATTTGATGTAGATTATATAAAAAGTAAGATCAAAAGAGTATCTCGAAGGGGTAAGAAGATCGGTGATGTAAGTAAAGAGGAGTTAAACGATGATAGGGTGGTCAGAAGCCAGAAAACAAAAGCCAAACGGATGAATCTTGATGAAAGGATTGCATTAAAAACAAACGAAAATAGTGAAAATGTCATTCCAACtcggaaaaaaagaaatggaaggAATAGAATTGGGAAGATTGACGAACTTCTTAGGGAATATTCAGCACCAGCTGATTTGGTCAGTCTGGActggaaaaaaatgaaaatacctCCAGTTCTTCCTAATTCCGAGCATGCATTTTTGTTCAAGTTGATGCAACCGATGAAGGCACTCCTTCAATTGAAAGAAGATTTAGAGAAGGATCTATCAAGAGAACCGACGGAGGAGGAAATAGCTGTTGCAACAAACATGCGCACTACTCAAGTAAAGAAAGCAATAAAGGTTGGTCAAGCTGCAAGAAACAAGCTGATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAGATACTTTTCAGATTTTGCTAATAGCTCGAGGTTTCAAGATCTTTGTCAGGCAGGAATTAAGGGACTTATGACAGCAATTGATCGTTTTGAGCCAAACCGGAAATTTCGGCTTTCAACCTACGGTTTGTTTTGGATAAGACATGCTATCGTTCGTTCCATGACCCTTTCAAGCTTCTCGCGGattccctttggacttgaatCGGTTAGAGCCGAGATCCAAAGAGCTAAAACTGAGTTAACAATTAAGCATCAGAGGCCACCAACAGAGGAAGAAATAATAGAAAGAGTTCACATATCCCCTGAAAGATACCGTGATGTAACGAAGGCTTCAAAACCTATTCTTTCACTGCATTCAAGACATCCAACCACGCAAGAAGAGTTTATCAATGGTGTTGTTGACGATGGTGGTGTTGATGGTGATAAAAGGAGGCAACCTGCTTTACTAAGGCTTGCTATTGATGATGTGCTTGATTCGCTGAAGCCGAAGGAGAACTTGGTGATCAGACAGAGATTTGGACTTGATGGTAAGGGTGACAGAACATTGGGAGAGATTGCGTCAAACTTGAACATCTCTAGAGAAATGGTGAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAACTTTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1542 0.3826 MGVVTVSSSAARSPLGLNTKFSSHNSVLKRPIIVAFKGDKQNDTALVTTQEKIPTQVKTKTHKKRIAKTNKLPKKEKAVFTEETFPSSLDVDYNEAAAILENIYKLSPPSDAFDVDYIKSKIKRVSRRGKKIGDVSKEELNDDRVVRSQKTKAKRMNLDERIALKTNENSENVIPTRKKRNGRNRIGKIDELLREYSAPADLVSLDWKKMKIPPVLPNSEHAFLFKLMQPMKALLQLKEDLEKDLSREPTEEEIAVATNMRTTQVKKAIKVGQAARNKLIKHNLRLVLFVINRYFSDFANSSRFQDLCQAGIKGLMTAIDRFEPNRKFRLSTYGLFWIRHAIVRSMTLSSFSRIPFGLESVRAEIQRAKTELTIKHQRPPTEEEIIERVHISPERYRDVTKASKPILSLHSRHPTTQEEFINGVVDDGGVDGDKRRQPALLRLAIDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSARLDYLRRYVV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03022 513 Pfam Sigma-70, region 4 448 500 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 Gene3D - 353 404 IPR036388 -
Tsu08g03022 513 Gene3D - 269 347 - -
Tsu08g03022 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 439 511 IPR013324 -
Tsu08g03022 513 Coils Coil 358 378 - -
Tsu08g03022 513 Gene3D - 227 268 IPR036388 -
Tsu08g03022 513 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 198 346 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 513 - -
Tsu08g03022 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 354 421 IPR013324 -
Tsu08g03022 513 Pfam Sigma-70 region 3 364 429 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 Gene3D - 436 513 IPR036388 -
Tsu08g03022 513 PRINTS Major sigma-70 factor signature 306 319 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 PRINTS Major sigma-70 factor signature 488 499 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 PRINTS Major sigma-70 factor signature 330 338 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 PRINTS Major sigma-70 factor signature 473 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 PRINTS Major sigma-70 factor signature 452 464 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 513 - -
Tsu08g03022 513 Pfam Sigma-70 region 2 279 344 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tsu08g03022 513 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 275 500 IPR014284 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03022 K03093 - gmx:100776369 743.036