Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03015 ATGGTGGATTCAGAACGAATCCAAAACCCATGGATGTCTTCCGAACATACTTCAATTCAAATGAATCTCAACGCCAACGCCACCAAACGATTTTCTTATCCTTCCAAATCATCGTTAAATAACGATAAATTAGGTGTTGCTGAACGTGCTTTCTCCGCCGCCGGCGCCGCCGTTCTCTCCGCCGTCATTGTCAATCCCCTTGATGTTGCCAAGACAAGGTTACAAGCACAAGCTGCAGGAGTCGCTTATTCTCATCCGCTCAGTAATTTGAACAGTAGAATGTCTTGTTTCGGGCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCATCATGTACCCGGGCTGGATTCCATGGCACTGTATCACTCTGTCCTCCCGATTGTTTTCGGTACAAAGGAACACTGGATGTCATGTATAAAATTATACAACAGGAAGGATTTACTAGGCTATGGAGAGGAACAAATGCAGGCCTGGCACTTGCAGTACCAACTGTTGGAATTTACCTTCCTTGCTATGACATATTCCGCAACTGGTTTGAGGAATACACAACCGAAAATGCTCCAACCGCAACTCCATATGTACCTTTAGTGGCTGGTTCATTGGCACGCTCACTTGCTTGTGCAACTTGTTATCCTATTGAACTTGCTAGAACTCGCATGCAgGCATTTAAAGAGACTCAAATCGGTAAAAAGCCACCTGGAGTATACCAGACTTTGGCAGGTGTTGTCAATGTCAAGGGGACAAATAGACCACCAAACAGCTTGCAAGGTTATCGTGTCCTATGGACCGGTATGGGCGCACAACTTGCTCGTGATGTACCATTCTCTGCAATTTGTTGGTCAACACTTGAGCCTACTAGAAGAAAACTTATTAGTTTGGTTGGAGGCGATGATGCCAGTATATTGAGTATTCTTGGTGCAAATTTTTCAGCTGGTTTTGTTGCAGGAACTCTAGCGGCTGGAGCTACATGTCCACTAGATGTTGCAAAAACTCGAAGGCAGATAGAGAGGGATCATGTCAGAGCATTGAAGATGACTACGAGACAGACACTGGTGGAAATTTGGAGAGATGGAGGCTTAAAAGGACTTTTTACTGGTTTGGGTCCGCGAGTTGGTCGAGCTGGTCCCTCCGTTGGAATTGTGGTTTCATTTTACGAAGTTGTAAAGTTTGCCCTAAATCACCGGCACACGACATCATGA 1200 0.4483 MVDSERIQNPWMSSEHTSIQMNLNANATKRFSYPSKSSLNNDKLGVAERAFSAAGAAVLSAVIVNPLDVAKTRLQAQAAGVAYSHPLSNLNSRMSCFGPNMMFADLRCSPSCTRAGFHGTVSLCPPDCFRYKGTLDVMYKIIQQEGFTRLWRGTNAGLALAVPTVGIYLPCYDIFRNWFEEYTTENAPTATPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQIGKKPPGVYQTLAGVVNVKGTNRPPNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLISLVGGDDASILSILGANFSAGFVAGTLAAGATCPLDVAKTRRQIERDHVRALKMTTRQTLVEIWRDGGLKGLFTGLGPRVGRAGPSVGIVVSFYEVVKFALNHRHTTS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03015 399 Gene3D Mitochondrial carrier domain 12 97 IPR023395 -
Tsu08g03015 399 Pfam Mitochondrial carrier protein 44 181 IPR018108 -
Tsu08g03015 399 Pfam Mitochondrial carrier protein 192 290 IPR018108 -
Tsu08g03015 399 Pfam Mitochondrial carrier protein 307 394 IPR018108 -
Tsu08g03015 399 PANTHER FI19922P1-RELATED 35 397 IPR045315 GO:1990542
Tsu08g03015 399 PANTHER BNACNNG35730D PROTEIN 35 397 - -
Tsu08g03015 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 44 178 IPR018108 -
Tsu08g03015 399 Gene3D Mitochondrial carrier domain 115 396 IPR023395 -
Tsu08g03015 399 SUPERFAMILY Mitochondrial carrier 42 387 IPR023395 -
Tsu08g03015 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 289 IPR018108 -
Tsu08g03015 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 303 391 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03015 Tsu-Chr8 45897232 45902002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03015 140 390 Organic Solute Cotransporters AT3G55640 28.016 5.25e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03015 K15119 - gmx:100810960 669.077