Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02979 ATGCAGGTAAGTATTGTGAGTGTTGTGTACTCACAATCAGAGCTTCTTCAAAAAGAGGTGTTTTTGGTAGAGTTGGTGGATTCGATTTCCAAGTCAAGCGAACCAATGTCACATCTCAAGGCCATTTACTTCCTTCGACCTACAGCAGAGAATATCCAGTATATGCGACGCCAGCTGGCTAGTCCTAGATTCGGAGAGTATCACCTATTTTTCTCCAACATAATGAAGGACCATCATATTCACTTACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTACAGGAGTTCTATGCAGATTATGTTGCGATTGATCCTTATCATTTCACTTTCCACATGCCTTCAAATTACATATATATGCTTCCAGCTGTCGTAGATCCTTCAGCACTGCAGCGTTTCAGTGATCGGGTTGTTGAAGGTCTTGCCGCTGTTTTTTTGACACTAAAACGGAGACCAGTAATTAGATATCAAAGAACATCTGACATTGCAAAAAGAATAGCACAGGAAGCAGCTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTCGATTTTAGGCGAATGGAAGTTTCTCCGTTGTTGTTGGTGATTGATAGGAGGGATGATCCTGTAACCCCACTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTGGATGTCAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCAGAACAAGATCCCTTTTTCAAAGCTAATATGTACGATAATTTCGGAGATATTGGTATGAATATCAAGCGACTGGTTGATGAATTTCAGCAAGTGGCAAAGAGTAATCAGAACATCCAAACAGTAGAGGACATGGCCAAATTTGTTGACAACTACCCTGAGTACAGAAAAATGCATGGGAATGTGACAAAACATGTGACTTTGGTAACAGAAATGAGCAAGATAGTTGAAGAGCGGAAACTTATGTCTGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACGATGAAAGCATATCAGATATGGACCGACTACGTTTGGTCATGCTATATGCTTTGCGATATGAGAAGGACAGCCCTGTTCAATTAATGCAGCTTTTCAACAAACTGGCTTCCAGATCTGCCAAATACAAACCCGGGCTTGTGCAGTTTCTTTTGAAGCAGGCTGGTGTTGACAAGAGAACTGGTGATCTTTATGGAAATCGAGATCTAATGAACATTGCCCGTAACATGGCTCGTGGACTGAAGGGTGTTGAGAACGTTTACACACAGCACCAGCCGCTTCTGTTCCAAATCATGGAAAGCATTGTCAAAGGGCGGTTGAAAGATGTAGACTACCCATTTTTTGGGAATCACTTTCAACAAGGAAGGCCCCAAGACGTAATTATCTTCATTGTTGGTGGGACAACATACGAGGAGTCACGGTCTGTTGCTCTACAAAATGCCAGCAATACAGGCGTTCGGTTTATACTTGGTGGGTCCTCTGTTCTTAATTCTAAAAGGTTTTTCAAGGACTTGGAAGAAGCTCAAAGGGTAGCTCGTTCTAGTACCTCTCTTTGA 1620 0.421 MQVSIVSVVYSQSELLQKEVFLVELVDSISKSSEPMSHLKAIYFLRPTAENIQYMRRQLASPRFGEYHLFFSNIMKDHHIHLLADSDEQEVVQQVQEFYADYVAIDPYHFTFHMPSNYIYMLPAVVDPSALQRFSDRVVEGLAAVFLTLKRRPVIRYQRTSDIAKRIAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDVKSIGKFPKDQEEVVLSSEQDPFFKANMYDNFGDIGMNIKRLVDEFQQVAKSNQNIQTVEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMSVSQTEQELACNGGQGAAFEAVTNLLNDESISDMDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLKDVDYPFFGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGVRFILGGSSVLNSKRFFKDLEEAQRVARSSTSL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02979 539 Gene3D - 2 100 IPR043154 -
Tsu08g02979 539 PIRSF VPS45_Sec1 1 537 IPR001619 GO:0016192
Tsu08g02979 539 Pfam Sec1 family 4 525 IPR001619 GO:0016192
Tsu08g02979 539 Gene3D - 127 527 IPR027482 -
Tsu08g02979 539 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 527 - -
Tsu08g02979 539 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 528 IPR036045 -
Tsu08g02979 539 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 527 IPR001619 GO:0016192
Tsu08g02979 539 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 210 323 IPR043127 -
Tsu08g02979 539 Gene3D - 325 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02979 Tsu-Chr8 45435777 45442590 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02979 K12479 - gmx:100782786 983.4