Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02978 ATGGATTTGATTAAAGCATCATCAAGCTTGCAACCATGGCGAATTCCTTCATCAATTCCACTTCTCACCATTTCTAGGTCTACGAATTCTTTCTATCTCCCTCTTCGCTCTACAATCCAATTCTCTTCTCAATTTTGCACTTTTCCATATTCTTCGATAAAGCCCCTTGGTATTCTTCATAGCAAGAACAAAAATTCTGATTCAGAATCCGTTATAGAACCCGCCATTGTCCAAGAAgtatcagaagatgaagaagaagttggtgttgatgatgatgaagaagaatttgaATATGAGACAGAAATAGATGAGGAATTCGAAAATGATAGTGATGGTGGCGGCGAGTATTATGACGACGAAGAGGGTTAtgaggaggaggaagaggaTAGTGTGCCCTATGCAGGTGATGGTGGTGGAGGTGGTGGAATCGCACTCGCCGGAACATGGTGGGATAAAAAAGCATTAGCTATTGCTAAAGAGGTTACTATGTCTTTTGATGGTGACTTCCAAATTTATGCTTTTAAAACTTTGGTTAATTCCACTATTCAAGTGCGCATTGAGAAGCTTTCCAACAAATCTGGCTCCCCCACCATGGAAGATGTTGAAGTCTTTTCTAAAACATACAGAGCAAAATTGGACGAAGCAGAACTTGCCAAATTGGTTCCTGAGAATTTAAGTTTGGAGGTGTCTTCTCCGGGTGTTGAAAGAATAGTTCGGATTCCAGATGATCTAGACCGATTCAAGGAGAGAGCTATGTATGTGAAATATGTCACTGATGGTGATTCAAATAATCCATCTGCAGAAAGTGACGGTGTCTTCAAGCTTGAATCCTTCGACGTGGAAACAAAATATTGCACCTGGAGTTTAGCAGACATAACTTATTTTATGGATTTAGAGCTTGGATTGTCAATAGCTTCTGTAGCAGCTGCTATTAGCGGCAGAGCAGCGGGAATTGAAATTATTAGAATGGAAAAGTGTTGGTTTTTTGGGGTGTTGATTGTGGTGGGATATGGGTGCTTCCTAAGGGACATTGTTGGGGTAGAAGGGTACCCAAATGAGGATTTGATTATGAAGTTGCCAGGCCAACCTAAAGTTGAATTCAAGCAATATGCTGGCTATGTTGATATTGATGTAAAACATGGGAAGAGTCTCTTCTACTACTTTGTTGAGGCTGACCAATACCCTGACAAAAAGCCCCTCACACTTTGGCTCAATGGAGGTCCAGGATGTTCCTCAATTGGAGGAGGTGCCTTTACTGAATTGGGTCCATTTTATACTACCGGTGATGGACGTGGTTTACAAAGAAACTCAAATTCTTGGAATAAAGTTTCTAATCTCCTCTTTTTGGAGTCTCCTATCGGAGTTGGTTGGTCATACTCAAATATAACTTCTGATTATAATAACTATGATGACGCTGCCACAGCCAATGACATGCTTTTGTTCATGTTGAAATGGTACGAGAAATTTTCTTCATACAAATCAAGAAAGTTGTTTCTTACCGGAGAAAGCTACGCAGgACATTTCATACCCCAGTTAGCCAATATTCTTCTTGATTATAATTCTCATTCAACtactttcaaattcaatataaaaGGAGTTGCTATTGGAAACCCACTTTTAAAATTGGATCGTGATACACAAGcaatatatgaatatttttggTCACATGGAATGATTTCAGATGAAGTTGGCCTTGCCATTATGAATTATTGCAATTATGATGGAACTAGTGATAACTTAACTAAATCATGCAAAGATGCTAGGATTGATGCTCAAGATATTGTGGGTGACTATATAGATAGTTATGATGTGATACTTGATGTTTGTTATCCATCTATAGCTGAACAAGAACTAAGATTGAAAAAAACGGCTACTAAAATAAGTTTGAATGTAGATGTTTGTGTGGATTCTGAAATATATATTTACCTCAACCTTCCGGAGGTTCAAAAAGCTCTTCATGCTAACCGTACTAATCTGCCATACCCATGGTCCATGTGTAGCAAtGTTTTAAATTACAACAATACAGATCATGATATTAATATGCTTCCGGTTCTCAAACGTATAGTTCAAAACCATATTCCAGTATGGGTTTATAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGCGAACTAGCTTATGATATGAAGTTCAACATTACAGACCCATATAGAGTTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTGACTGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCAGGTCATATGGTATCATATGGGCAACCTTCTAGAGGATTGCAACTATTTAGTTCATTCGGCATGGAAGTTGATTTTCCCATGAACACCAGACAAAAAGCTGTTTTTGGATGCTTGAAGGCAACATATGCTCAAGATTTCCTCTTAGTTGTCCCCATCTATCTACGGATTAGGCCAACACATGTCCCCATTAGAGTATCATACTATCCTTag 2484 0.3748 MDLIKASSSLQPWRIPSSIPLLTISRSTNSFYLPLRSTIQFSSQFCTFPYSSIKPLGILHSKNKNSDSESVIEPAIVQEVSEDEEEVGVDDDEEEFEYETEIDEEFENDSDGGGEYYDDEEGYEEEEEDSVPYAGDGGGGGGIALAGTWWDKKALAIAKEVTMSFDGDFQIYAFKTLVNSTIQVRIEKLSNKSGSPTMEDVEVFSKTYRAKLDEAELAKLVPENLSLEVSSPGVERIVRIPDDLDRFKERAMYVKYVTDGDSNNPSAESDGVFKLESFDVETKYCTWSLADITYFMDLELGLSIASVAAAISGRAAGIEIIRMEKCWFFGVLIVVGYGCFLRDIVGVEGYPNEDLIMKLPGQPKVEFKQYAGYVDIDVKHGKSLFYYFVEADQYPDKKPLTLWLNGGPGCSSIGGGAFTELGPFYTTGDGRGLQRNSNSWNKVSNLLFLESPIGVGWSYSNITSDYNNYDDAATANDMLLFMLKWYEKFSSYKSRKLFLTGESYAGHFIPQLANILLDYNSHSTTFKFNIKGVAIGNPLLKLDRDTQAIYEYFWSHGMISDEVGLAIMNYCNYDGTSDNLTKSCKDARIDAQDIVGDYIDSYDVILDVCYPSIAEQELRLKKTATKISLNVDVCVDSEIYIYLNLPEVQKALHANRTNLPYPWSMCSNVLNYNNTDHDINMLPVLKRIVQNHIPVWVYSGDQDSVVPLLGSRTLIRELAYDMKFNITDPYRVWFHKGQVGGWVTEYGNLLTFATVRGAGHMVSYGQPSRGLQLFSSFGMEVDFPMNTRQKAVFGCLKATYAQDFLLVVPIYLRIRPTHVPIRVSYYP 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02978 827 MobiDBLite consensus disorder prediction 82 130 - -
Tsu08g02978 827 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 327 787 IPR001563 GO:0004185|GO:0006508
Tsu08g02978 827 Gene3D - 681 778 - -
Tsu08g02978 827 Pfam Serine carboxypeptidase 361 777 IPR001563 GO:0004185|GO:0006508
Tsu08g02978 827 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 459 IPR001563 GO:0004185|GO:0006508
Tsu08g02978 827 PRINTS Carboxypeptidase C serine protease (S10) family signature 750 763 IPR001563 GO:0004185|GO:0006508
Tsu08g02978 827 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 448 IPR001563 GO:0004185|GO:0006508
Tsu08g02978 827 PRINTS Carboxypeptidase C serine protease (S10) family signature 485 510 IPR001563 GO:0004185|GO:0006508
Tsu08g02978 827 SUPERFAMILY YhbC-like, N-terminal domain 179 235 IPR035956 -
Tsu08g02978 827 SUPERFAMILY alpha/beta-Hydrolases 358 777 IPR029058 -
Tsu08g02978 827 Gene3D alpha/beta hydrolase 351 610 IPR029058 -
Tsu08g02978 827 Pfam RimP N-terminal domain 176 235 IPR028989 -
Tsu08g02978 827 ProSitePatterns Serine carboxypeptidases, serine active site. 499 506 IPR018202 GO:0004185
Tsu08g02978 827 PANTHER CARBOXYPEPTIDASE 327 787 - -
Tsu08g02978 827 Gene3D - 634 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02978 Tsu-Chr8 45421108 45433922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02978 642 777 Calmodulin-binding Proteins AT2G22960 29.412 4.21e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02978 K16297 - gmx:100803335 741.88