Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02910 ATGGTTGGAAAGGATAATCTAAGAACTGAGgatttgaatttgtgttttGAGAATCTTATGATGGTTGCTGGTGGTGGGAATGGAGGGAACATGAAAGTTGGTGTGATTACTGAATGGAAGGATATTCCTGTTGAACTTTTGATGCAAATTCTGTCTCTTGTGGATGATCAGACTGTTATTAGAGCTTCCGGTGTTTGTCGTGGATGGAGAGATTCTATTTACTTTGGTCTTGCTCGTTTATCACTCTCATGGTGTAACAAGAACATGAACAACTTGGTCTTATCTCTTGTTCCAAAGTTTGCAAAATTGCAAACACTAATCCTTCGTCAAGACAAGCCACAACTAGACGATAATGCTGTTGGGACTATTGCAAATTTCTGTCATGACCTACAGATTCTTGACCTGAGCAAAAGTTTCAAGCTCACCGATCGTTCACTATATGCTATAGCTCATGGTTGCCGCGATCTCACAAAACTAAACATCAGTGGATGCTCAGCATTTAGTGACAATGCTCTCGCCTACCTTGCTGGTTTCTGTAGAAAATTGAAAGTTCTTAATCTCTGTGGATGTGTTAGAGCAGCCTCGGATACTGCACTTCAGGCTATTGGAACTTACTGCAACCAGTTACAATCTTTGAACCTTGGATGGTGTGATACAATTAGTGATGTTGGAGTGATGAGCTTAGCTGATGGATGTCCTGATCTAAGAACAGTTGACTTGTGTGGCTGTGTCCATATAACAGATGATAGTGTGATTGCTTTGGCAAACAGATGCCCTCACCTGAGGTCCCTTGGACTGTACTTCTGCAAGAACATCACAGACAATGCAATGTATTCCTTGGCACAAAGCAAAGTGAAGAACAGGATGTGGGGATCTGTTAAAGGAGGAAATGATGAAGATGGATTAAGGAATTTGAACATTAGCCAATGCACTGCACTCACTCCTTCTGCTGTTCAGGCAGTTTGCGACTCATCCCCGGCTCTCCACACATGCTCAGGCAGGCATTCACTCATCATGAGTGGCTGCCTCAACTTGACTTCTGTTCATTGCGCTTGTGCTGTTCATGCACACCGCGCAATCAACACTTTCCCTCATTCTGCTCATTGA 1107 0.4255 MVGKDNLRTEDLNLCFENLMMVAGGGNGGNMKVGVITEWKDIPVELLMQILSLVDDQTVIRASGVCRGWRDSIYFGLARLSLSWCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLDDNAVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAASDTALQAIGTYCNQLQSLNLGWCDTISDVGVMSLADGCPDLRTVDLCGCVHITDDSVIALANRCPHLRSLGLYFCKNITDNAMYSLAQSKVKNRMWGSVKGGNDEDGLRNLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAINTFPHSAH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02910 368 Gene3D Ribonuclease Inhibitor 80 295 IPR032675 -
Tsu08g02910 368 PANTHER UNCHARACTERIZED 1 350 - -
Tsu08g02910 368 SUPERFAMILY F-box domain 38 73 IPR036047 GO:0005515
Tsu08g02910 368 Pfam F-box-like 40 73 IPR001810 GO:0005515
Tsu08g02910 368 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 350 - -
Tsu08g02910 368 SUPERFAMILY RNI-like 75 282 - -
Tsu08g02910 368 SMART LRR_CC_2 127 152 IPR006553 -
Tsu08g02910 368 SMART LRR_CC_2 258 283 IPR006553 -
Tsu08g02910 368 SMART LRR_CC_2 232 257 IPR006553 -
Tsu08g02910 368 SMART LRR_CC_2 179 205 IPR006553 -
Tsu08g02910 368 SMART LRR_CC_2 153 178 IPR006553 -
Tsu08g02910 368 SMART LRR_CC_2 299 324 IPR006553 -
Tsu08g02910 368 SMART LRR_CC_2 206 231 IPR006553 -
Tsu08g02910 368 Pfam Leucine Rich repeat 206 229 IPR001611 GO:0005515
Tsu08g02910 368 Pfam Leucine Rich repeat 232 255 IPR001611 GO:0005515
Tsu08g02910 368 Pfam Leucine Rich repeat 258 281 IPR001611 GO:0005515
Tsu08g02910 368 Gene3D - 36 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02910 Tsu-Chr8 44418977 44422280 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02910 K03875 - gmx:100818928 650.973