Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02906 ATGGCAGCTACTTTGTTATTTAAAAGGTCTAGGAACTTATTAGTTCAAAATaaggtgttgttgttgttaggaataggatcaacaacaacaactccaTTACCATTCATTAACCATCATCGTTTTCGAtatacttcttcttcttctaagcCATTTGTTGCATCGTCGTTATTGCGTTATGAATCAACCAAAGCACAGGCACAGTTGGAAGATTTTCAAcaacatgatgatgatgatcagGTCCTTGATTTTCCTGGAGGGAAAGTTGCATTCACTTCTGAAATGAGATTCATTTCAGATATTTCTCACAAAAGGGTTCCGTGCTATCGAGTCCTTGATGACGATGGTGAACTCATGACACATACCAATCATGTTCAGGTTAGCAAAGAAATGGCTGTGAGGATGTATTCTGAGATGGTCACTCTTCAAACAATGGACAACATATTCTATGAGGTGCAGAGGCAAGGAAGAATTTCCTTCTACCTCACCTCAATGGGAGAAGAAGCTATTAACATCGCATCAGCAGCCGCGCTTTCTTCTGATGATATCATATTGCCTCAGTACCGGGAGCCTGGAGTTCTGTTATGGCGTGGTTTTACGTTGCAACAATTTGCTCATCAATGCTTTGGAAACACAAATGATTTTGGTAAAGGAAGGCAAATGCCTATACACTACGGCTCTAACAAGCACAATTACTTCACAGTTTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTAGGCGCTGCTTATTCGCTTAAAATGGACGGGAAAAGTGCATGTGCGGTCACTTTTTGTGGGGATGGTGCTACTAGTGAAGGAGACTTTCATGCTGGTATGAATTTTGCAGCGGTAATGGAAGCACCAGTTATTTTTATCATTCGTAACAATGGATGGGCTATCAGTACTCCTGTTGAAGATCAATTTCGAAGCGATGGTATTGTGGTGAAAGGTCAAGCTTATGGCATATGGAGTATAAGAGTAGATGGAAATGATGCTCTTGCTGTATACAGTGCAGTTCATACTGCACGCGAAATTGCTATAAAAGAACAAAGACCGGTTTTAATTGAGGCTCTCAGTTATAGAGTAGGACACCACTCTACATCCGATGATTCGACCAAGTACCGACCAATTGATGAGATTGAATATTGGAAAATGGAAAGAAGTCCTGTGAATAGATTCAAAAGATGGGTTGAAAGGAATGGTTGGTGGAGTGAAAAGGATGAATTGGAGCTTAGAAGCAGTGTCAGGAAGCAGTTAATGCATGCGATTCAAGTGGCGGAGAAAGCACAAAAACCTCCACTCGAGGACTTATTTACCGACGTGTATGACCAACTTTCATCAAACCTTGAGGAGCAAGAAAGACTACTTAGAAAAGACATTGAGAAGCATCCCAAAGATTACCCTTCTGATGTTCCTTTGTAG 1422 0.3875 MAATLLFKRSRNLLVQNKVLLLLGIGSTTTTPLPFINHHRFRYTSSSSKPFVASSLLRYESTKAQAQLEDFQQHDDDDQVLDFPGGKVAFTSEMRFISDISHKRVPCYRVLDDDGELMTHTNHVQVSKEMAVRMYSEMVTLQTMDNIFYEVQRQGRISFYLTSMGEEAINIASAAALSSDDIILPQYREPGVLLWRGFTLQQFAHQCFGNTNDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGATSEGDFHAGMNFAAVMEAPVIFIIRNNGWAISTPVEDQFRSDGIVVKGQAYGIWSIRVDGNDALAVYSAVHTAREIAIKEQRPVLIEALSYRVGHHSTSDDSTKYRPIDEIEYWKMERSPVNRFKRWVERNGWWSEKDELELRSSVRKQLMHAIQVAEKAQKPPLEDLFTDVYDQLSSNLEEQERLLRKDIEKHPKDYPSDVPL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02906 473 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 105 468 IPR029061 -
Tsu08g02906 473 Pfam Dehydrogenase E1 component 137 433 IPR001017 GO:0016624
Tsu08g02906 473 Coils Coil 442 462 - -
Tsu08g02906 473 CDD TPP_E1_PDC_ADC_BCADC 134 426 - -
Tsu08g02906 473 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 1, MITOCHONDRIAL-LIKE 54 473 - -
Tsu08g02906 473 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 54 473 - -
Tsu08g02906 473 Gene3D - 76 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02906 Tsu-Chr8 44341474 44347638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02906 37 310 Acyl Lipid Metabolism Gene Families AT1G21400 67.742 3.41e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02906 K00166 - gmx:100796766 743.806