Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02905 ATGTACCCATTTTTTAAGCAAACACAGTGTCTTCACTCTTCACTTTCTCATTCTTCTATTCTCCTAAACCACTGTTTATCTCATAAATCCGCAAACTTTCTCAAAATTGTTCATGCCCACTTCCTCAAATTGGGTCTTAATACCTATACTTATTTGGGTAATCGTTGTATTAATCTTTATACTGAATTCGGTCACATTAATGATGCCTTGAAGGTGTTTGATGATATTTCTTACAAGAATTCTACTTCATGGAACATTTGCTTGAAAGGGTTGTTTAAAAGTGGTCAACTTGGTAAGGCATGTTACATGTTTGATAGAATGCCTGTTAGAGATGTTGTTAGTTGGAATACCGTGATTTCTGGTTATGCTTCTTGTGGGTTTTCTAGTCGTGCATTGGAGCTTTTTGTTGAAATGCAAGGTACTGGTGTGAGACCGAGTGAGTTTACTTTCTCTATTTTAACGTCACTTGTGTCGAGTGCTTGTCATGCTAAGCAGGTTCATTGTAGGATGACTAGAAGTGGGATGGATTTGTCTAATGTGGTGCTTGGAAATTCGTTGATAACTATGTATGGGAAGTTTGGTCTTGTTGATTATTGTTTTGCCGTGATTTTGACTATGAAGCAGCTTGATGTTATATCTTGGAACTCTTTGATATGGGCTTGTTATAAAGCTGGAAGGCTAGAGCTTGCTCTTGAGCAGTTCCGTACAATGAGAGCTTCGGAGTTGTTACCTGATGAGTTTACGTGTTCAACATTGATGAGTGTTTGTTCTTACTTGCGAGATTTGGAAAAGGATTGGAGGACGCTACACGATTTGGGGAAAGATGCTTTGCGGCTCTTTGTGCTGACCTTGAGAAAGAATATCAGACCAACAGAATACACGGTTAGCTGTCTTCTGAATTCTGTTTCAATTTTCTTGCCAGTAGAAGTGGGTAATCAAATCCATGCTTTGATTCATAAATTGGGTTTCGAGTCAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATGGTAAATTTGGATTTGTTGACAATGCCTTGAATATATTCAacgaaataaaaacaaaagactTGGTGTCATGGAACACTATAATGATGGGACTGTCTTACAATGGTAAAGTCTCTGCGGCCATGGAACTCTTCAAGGAATTGATAAGCGTTGGAATGCCACCTGATCGAATAACATTTGCTGCAGTTCTACTAGCATGCAACAATGGGAGCTTGGTGGATGAAGGAATGGAAATATTTTCCCTAATGGAGATGGAATTTGGAGTAAAACCCGAGGAAGAACATTATTCATATGTTGTGGAGATGTTTTGTAGAGCTGGTAAGCTCGAAGAAGCCATCATAATTGTGGAAAATATGCCGTATAGAGCTACCCCTGACATTTGGAGGTCAATTCTTTCTGCTTGTGCAATGTATGGAGACTTGCAAGCTATTGAAATAGTTGCGACGAAAATAATGGAGAGGTCGCCACAGACAACCTTACCTTACTTGGTGTTGTCTCAGATATATCAGATGAATGGCAGATGGGAGAGCAAGGTTCGAGTGAGGAAGGCTATGGAAAATAGAGGTAGTAAAGAGTTGATTGGATGCAGTTGGGTGGGAATAAAAAACCATGTATATACTTTTGAATCAAATCAATTACAGCATTATGGTGGCAAAGATATTTATCTGCTACTGAATTTACTGGTATGGGAGATGGAGACTGAAAATAATGATGTCTAA 1728 0.3843 MYPFFKQTQCLHSSLSHSSILLNHCLSHKSANFLKIVHAHFLKLGLNTYTYLGNRCINLYTEFGHINDALKVFDDISYKNSTSWNICLKGLFKSGQLGKACYMFDRMPVRDVVSWNTVISGYASCGFSSRALELFVEMQGTGVRPSEFTFSILTSLVSSACHAKQVHCRMTRSGMDLSNVVLGNSLITMYGKFGLVDYCFAVILTMKQLDVISWNSLIWACYKAGRLELALEQFRTMRASELLPDEFTCSTLMSVCSYLRDLEKDWRTLHDLGKDALRLFVLTLRKNIRPTEYTVSCLLNSVSIFLPVEVGNQIHALIHKLGFESDAVVANSLVDMYGKFGFVDNALNIFNEIKTKDLVSWNTIMMGLSYNGKVSAAMELFKELISVGMPPDRITFAAVLLACNNGSLVDEGMEIFSLMEMEFGVKPEEEHYSYVVEMFCRAGKLEEAIIIVENMPYRATPDIWRSILSACAMYGDLQAIEIVATKIMERSPQTTLPYLVLSQIYQMNGRWESKVRVRKAMENRGSKELIGCSWVGIKNHVYTFESNQLQHYGGKDIYLLLNLLVWEMETENNDV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02905 575 Pfam PPR repeat family 210 256 IPR002885 -
Tsu08g02905 575 Pfam PPR repeat family 356 403 IPR002885 -
Tsu08g02905 575 Pfam PPR repeat family 110 153 IPR002885 -
Tsu08g02905 575 Gene3D Tetratricopeptide repeat domain 407 550 IPR011990 GO:0005515
Tsu08g02905 575 PANTHER OS03G0435200 PROTEIN 269 571 - -
Tsu08g02905 575 PANTHER OS03G0435200 PROTEIN 1 264 - -
Tsu08g02905 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Tsu08g02905 575 Pfam PPR repeat 431 455 IPR002885 -
Tsu08g02905 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Tsu08g02905 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Tsu08g02905 575 PANTHER OS07G0578800 PROTEIN-RELATED 269 571 IPR045215 GO:0003723|GO:0009451
Tsu08g02905 575 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Tsu08g02905 575 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Tsu08g02905 575 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Tsu08g02905 575 Pfam E motif 475 535 IPR046848 -
Tsu08g02905 575 Gene3D Tetratricopeptide repeat domain 18 163 IPR011990 GO:0005515
Tsu08g02905 575 Gene3D Tetratricopeptide repeat domain 309 406 IPR011990 GO:0005515
Tsu08g02905 575 Gene3D Tetratricopeptide repeat domain 164 271 IPR011990 GO:0005515
Tsu08g02905 575 PANTHER OS07G0578800 PROTEIN-RELATED 1 264 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02905 Tsu-Chr8 44331861 44333753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02905 103 569 Glycoside Hydrolase AT3G49170 27.903 2.16e-64 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02905 - - gmx:102663822 842.032