Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02904 ATGACTATGGAGTTGCATGGCGTGTGCCGCACGCTTCGTGAAGCGAGACAACTCCACCTATCACTCCTCAAAACTGGTTCTCTACATTCATCTGTCACCACCACCAACCGCCTCCTTCAACTTTACACCCGCTGTGGCTCTCTCCATGATGCATCCAAACTGTTTGACGAAATGCCGCAACCAAACCCTTTCTCATGGACCACCCTCATTGAAGCACACATCAACTCAGGCAACCGAAATAAGTCCCTGCAATTGTTCCACGCCATGCCTCACAAAACCCATTATTCTTGGAATCTCCTTGTTTCTTCCTTTTCCAAATCCGGTGACCTTCAACAAGCTCAAACTCTCTTCAATGTCATGCCTATGAAGAATCCCCTTGTCTGGAATTCCATCATTCATGGTTATTCTCGACATGGGCATCCCAGAAAAGCGCTTTTACTCTTTAAGGAGATGAATTTAGACCCTTTAGAAACTGTGCACCGTGATGCGTTTGTGTTGTCAACTGTTTTCGGTGTATGTGCTGACTTGTTTGCTCTTGATTGTGGGAAACAAGTCCATGCCCGTTTATTCATTGATGGTTTTGAACTCGAACTTGACAAGGTTTTGTGCAGTTCGATAGTTAATTTTTATGGGAAATGTGGTGATTTGGATAGTGCTGCTCGCGTTGTGGGTTTTGTGAAGGAAGTTGATGACTTTTCTTTATCTGCTTTGGTATCAGGCTATGCAAATGCTGGTAGAATGGATGATGCAAGAAGGGTTTTTGATAAAATGGTTGATCCTTGTGCTGTGCTGTGGAATTCGATTATTTCGGGTTATGTGTCCAATGGTGAGGAAATGGAAGCATTGGCTCTCTTCAACACAATGCGTAGGAATGGTGTTTGGGGAGACTTCTCCGCTGTTGCAAACATTTTGAGTGCTGCTAGTAGCTTGGTCAATGTTGAACTTGTTAAGCAAATGCATGATCATGCTTGTAAAATTGGGGTGACTCGTGATATTGTGGTTGCTAGTGCTCTGCTTGATGCATACTCCAAATGTCAACACCCTCATGAAGCTTGCAAGTTATTTGGTGAGCTCAAAGCCTATGATGCAATCTTGCTTAATACCATGATTACTGTATATTGTAATTGTGGAAGAATTGAAGATGCAAAATGGATTTTTAACTCGATGCCTAATAAAACCTTGATTTCATGGAATTCAATCTTGGTTGGCCTTGCTCAAAATGCAGCTCCAAGTGAGGCATTGGATACTTTTTCTAGGATGAATAAGCTGGATGTAAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGCTAGTAAATCATTCCTCAAACTTGGGGAGCAAGTATTTGGTAAAACTATCGCTTTGGGGCTTGAATCTGACCAAATCATTTCTACCTCGCTTGTTGACTTTTATTGTAAATGCGGTCTTGTTGAGATGGGACGAAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTTTCATGGAATACAATGCTGATGGGATATGCGATAAATGGGTATGGAGTAGAAGCACTAACCCTTTTTAATGAAATGAGGTATGGTGGTGTGAGGCCTTCTGCTATTACTTTTATTGGGGTTCTTTCAGCTTGTGATCACTGTGGTCTGGTAGAAGAAGGAAGAAAGATGTTCCACACTATGAAATATGAGTATGATATAAATCCAGGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGCCAGAGCTGGTTATTTTGGGGAAGCAATGTATCTTATTGACGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTATCAGTATTAAGAGGCTGCATATCGCATGGAAATAAGGCTATTGGAATAAAGGCGGCAGAGCAAATTATTCAGCTTGATACTGAAAATTCAGGTGCTTATATACAATTATCTAACATACTTGCAACTTCTGGAGACTGGGAAGGATCAGCAAAATTATTGGCAGGAAGGTATTTTGAGGTTCAGAAATCTAGCCGATTGGAATTTGTATCAATGCCTGAAGCCCTCAACTCGGATTCACATGGCACATATCTGTCAATGCTGGATCTTTGCAGAAGGGCAGAGACTTCACTAAGGATACAGATACATCCCACATGTCCATCCCCTCTCCTCCACCTCTATCTGAAATCTGAACCACCGCAATGCTGCAAACTGACCTTCACTCAGATCGAAGTTGTTCAAGCTCAAAGTTGTAGCGACACACGCCGCATGCCGATTTGTAATGCCTAA 2253 0.419 MTMELHGVCRTLREARQLHLSLLKTGSLHSSVTTTNRLLQLYTRCGSLHDASKLFDEMPQPNPFSWTTLIEAHINSGNRNKSLQLFHAMPHKTHYSWNLLVSSFSKSGDLQQAQTLFNVMPMKNPLVWNSIIHGYSRHGHPRKALLLFKEMNLDPLETVHRDAFVLSTVFGVCADLFALDCGKQVHARLFIDGFELELDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMDDARRVFDKMVDPCAVLWNSIISGYVSNGEEMEALALFNTMRRNGVWGDFSAVANILSAASSLVNVELVKQMHDHACKIGVTRDIVVASALLDAYSKCQHPHEACKLFGELKAYDAILLNTMITVYCNCGRIEDAKWIFNSMPNKTLISWNSILVGLAQNAAPSEALDTFSRMNKLDVKMDKFSFASVISACASKSFLKLGEQVFGKTIALGLESDQIISTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYAINGYGVEALTLFNEMRYGGVRPSAITFIGVLSACDHCGLVEEGRKMFHTMKYEYDINPGIEHYSCMVDLFARAGYFGEAMYLIDEMPFQADANMWLSVLRGCISHGNKAIGIKAAEQIIQLDTENSGAYIQLSNILATSGDWEGSAKLLAGRYFEVQKSSRLEFVSMPEALNSDSHGTYLSMLDLCRRAETSLRIQIHPTCPSPLLHLYLKSEPPQCCKLTFTQIEVVQAQSCSDTRRMPICNA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02904 750 PANTHER OS07G0578800 PROTEIN-RELATED 11 93 IPR045215 GO:0003723|GO:0009451
Tsu08g02904 750 PANTHER OS07G0578800 PROTEIN-RELATED 161 653 IPR045215 GO:0003723|GO:0009451
Tsu08g02904 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat family 494 540 IPR002885 -
Tsu08g02904 750 Gene3D Tetratricopeptide repeat domain 511 676 IPR011990 GO:0005515
Tsu08g02904 750 Gene3D Tetratricopeptide repeat domain 2 184 IPR011990 GO:0005515
Tsu08g02904 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 64 90 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 34 59 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 395 423 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 568 592 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 95 123 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 263 293 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 468 492 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 127 151 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 336 359 IPR002885 -
Tsu08g02904 750 Pfam PPR repeat 367 391 IPR002885 -
Tsu08g02904 750 PANTHER OS07G0578800 PROTEIN-RELATED 99 157 IPR045215 GO:0003723|GO:0009451
Tsu08g02904 750 Pfam PPR repeat 230 258 IPR002885 -
Tsu08g02904 750 PANTHER OS03G0849700 PROTEIN 99 157 - -
Tsu08g02904 750 PANTHER OS03G0849700 PROTEIN 11 93 - -
Tsu08g02904 750 PANTHER OS03G0849700 PROTEIN 161 653 - -
Tsu08g02904 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Tsu08g02904 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Tsu08g02904 750 TIGRFAM PPR: pentatricopeptide repeat domain 127 151 IPR002885 -
Tsu08g02904 750 TIGRFAM PPR: pentatricopeptide repeat domain 569 592 IPR002885 -
Tsu08g02904 750 TIGRFAM PPR: pentatricopeptide repeat domain 263 293 IPR002885 -
Tsu08g02904 750 TIGRFAM PPR: pentatricopeptide repeat domain 496 529 IPR002885 -
Tsu08g02904 750 TIGRFAM PPR: pentatricopeptide repeat domain 233 258 IPR002885 -
Tsu08g02904 750 Gene3D Tetratricopeptide repeat domain 185 309 IPR011990 GO:0005515
Tsu08g02904 750 Gene3D Tetratricopeptide repeat domain 337 457 IPR011990 GO:0005515
Tsu08g02904 750 Pfam E motif 611 654 IPR046848 -
Tsu08g02904 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 260 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02904 Tsu-Chr8 44319978 44324245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02904 32 654 Glycoside Hydrolase AT3G49170 30.709 1.06e-93 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02904 - - gmx:100790756 1035.4