Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02878 ATGGCATACTTGGAGGAAATAAGAAAGTCCCAAAGAGCCAATGGAGCAGCTACCATACTAGCAATTGGCACTGCAACTCCATCCAATTGCATTTACCAATCTGATTTCACTGATTATTACTTTCGAGTtaccaaaagtcaacacatgaCTCAACTCAAGGACAAACTCAAACGTATATGTGAGAAATCAATGATAAAGAAACGGTACATATACCTAACAGAAGAAATTCTTAAAGAAAACCCAAACATATCCACTTATGAAGAACCATCGCTTGACGCACGCCAAGACATGTTAGTTGAAGAGGTACCAAAGCTAGGCGAAAAAGCAGCATCAAAAGCAATAAAAGAATGGGGAAGATCAAAATCAGAGATAACTCATCTCATATTTTGTTCAACTTCTGGCGTCGACATGCCTGGTGCTGATTATCAACTCATCAAACTCTTAAATCTAAACCCAACCACAAAAAGGTTCATGTTATATCACCAAGGTTGTTTCGCTGGTGGAACTGTTCTTCGTCTCGCTAAAGATTTAGCTGAGAATAACATTGGTGCACGTGTCCTCGTTGTGTGCTCTGAAATAACTGTCGTTACTTTTCGTGGGCCCAATGAAAATCACTTGGATTCCTTAGTTGGACAAGCACTATTTGGTGATGGTGCTTCGTCTGTGATTGTTGGATCAGATCCTGATACGACAATCGAACATCCATTATTTCATATCATTTCGGCTTCAGAAACGATTTTACCAAACTCTGAAgGTGCAATTGAAGGACACTTGCGTGAAGTAGGGCTCACTTTTCATCTAAAAGACAACGTTCCAAATTTGATTGGTGAAAACATTGAGAAGAGTCTAATAGAAACTTTTCATCCATTAGGGATTAGTGATTGGAATTCATTGTTTTGGATAGCACACCCTGGTGGTCCTGCAATATTGAAGAAGATTGAAGAAATAGTTGGGCTGAATTCAGAAAAACTAAATGCAACTAAACATGTTTTGAGTGAATATGGGAACATGTCAAGTGCATGTGTGCTATTTATATTGGATGAAATGAGGAAAAGGTCTATGGAGAAAGGGAAATTGACTACTGGTGATGGATTGAAATGGGgtgttttgtttggatttggtCCTGGCTTGACTATGGAAACCATTGCTTTGCATAGTGTCAACATAGATCACCACTACTAG 1182 0.3765 MAYLEEIRKSQRANGAATILAIGTATPSNCIYQSDFTDYYFRVTKSQHMTQLKDKLKRICEKSMIKKRYIYLTEEILKENPNISTYEEPSLDARQDMLVEEVPKLGEKAASKAIKEWGRSKSEITHLIFCSTSGVDMPGADYQLIKLLNLNPTTKRFMLYHQGCFAGGTVLRLAKDLAENNIGARVLVVCSEITVVTFRGPNENHLDSLVGQALFGDGASSVIVGSDPDTTIEHPLFHIISASETILPNSEGAIEGHLREVGLTFHLKDNVPNLIGENIEKSLIETFHPLGISDWNSLFWIAHPGGPAILKKIEEIVGLNSEKLNATKHVLSEYGNMSSACVLFILDEMRKRSMEKGKLTTGDGLKWGVLFGFGPGLTMETIALHSVNIDHHY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02878 393 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Tsu08g02878 393 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Tsu08g02878 393 Gene3D - 236 391 IPR016039 GO:0016746
Tsu08g02878 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 389 IPR011141 GO:0009058|GO:0016747
Tsu08g02878 393 Gene3D - 1 235 IPR016039 GO:0016746
Tsu08g02878 393 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Tsu08g02878 393 Pfam Chalcone and stilbene synthases, C-terminal domain 239 387 IPR012328 -
Tsu08g02878 393 SUPERFAMILY Thiolase-like 235 387 IPR016039 GO:0016746
Tsu08g02878 393 CDD CHS_like 16 384 - -
Tsu08g02878 393 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Tsu08g02878 393 PANTHER CHALCONE SYNTHASE 2 4 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02878 Tsu-Chr8 43957904 43959432 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02878 K00660 - nnu:104591893 617.846