Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02839 ATGGCCACACTCTCACACCCATTCCCACTCTTCTTCTCCATTCAGAGAACCTACCACTCCAATGCCTTCTTCATCCGACCTCCCCCTTCCTTCATACGCCTCCCACAACGTCGTTTCACACCCGCATTCGCTACCACTGCCTCCATTAAGGAAAAGATTGGTGGCATTCATAAGACTTTCACTGACTTCACTAGCCTGAACCACTGGGTAGTTAGTGACTATTTCCGTCTAGTGAACTCTGTCAATGCCTTTGAGCCTCGGATTCAGGCGCTCTCTGATGACCAGTTGGCTGCAAAAACTGAGGAGTTTCGTCTCCGGCTCAAGCGTGGGGAGACACTTGCGGATATCCAAGCCGAGGCGTTCGCTGTTGTTCGTGAGGCTGCGAGAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATTGGTGGAGCTGTGCTGCATGATGGGTCCATTGCCGAGATGAAAACGGGAGAGGGGAAAACCTTAGTCTCCACACTAGCAGCATATCTTAATGCTCTGACCGCTGAGGGTGTCCATGTTGTAACTGTGAATGATTATTTAGCTAAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAAGGGGATGAAATCTGAAGAACGCAGATTCAACTATAGATGTGATATAACATACACCAATAATTCGGAGCTTGGCTTTGATTACTTGAGAGATAATCTTGCTGGAAATAGCAAACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCTATTGTTGATGAGGTGGATTCAGTCTTGATAGATGAGGGAAGAAATCCGTTGTTAATCAGTGGTGAGGCTAGTCAAGAGGCTGCACGGTACCCTGTTGCTGCAAAAGTGGCCGAATTGCTTACACAGGGCATTCATTACACAGTGGAACTCAAAAATAATTCAGTGGAGTTGACCGAGGAAGGAATTACTCTTGCTGAAATGGCTCTAGAAACAAATGATCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGGAATACATTGTCAGAGATGGAAAGGCTTTAATTATAAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTCGTGGCACAAATCACGTATCAATCATTATTCAAGCTTTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGACGCCAGTAATTGAAGTTCCCACAAATCTTCCTAATATTCGCAAAGACTTGCCTGTTCAAGCATTCGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGACGAGAAGTTGAAGATATCTTTAGACAAGGGCGTCCGGTCTTGGTTGGGACAACTAGTGTAGAGAATTCTGAACTTTTGGCTGCTCTGCTTAGGGAGTGGAATATTCCCCATAATGTTCTGAATGCTCGACCCAAGTATGCTGCGAGAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACAATATCTACAAATATGGCAGGCAGGGGTACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCGTGGTTCCTTTTTTGACACTGGAGGATCCAAATAGTGAATTTGCCGGTGAGGCCATTTCAGAAAAGATGCTTCCAAAGATAAAGGTGGGATCATCATCATTAGCCTTACTGGCTAAGACAGCCTTAATGGCAAAATATGTATCGAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGACTATATCTTTTATCTTGGGGTCTGTTGAAATGAGTCTTTCGTATAGTTTGAAAGAGCTGGAGGAACTTGCCAATGAAGAATCTGAGTTCTACCCACTTGGTCCAACAGTAGCACTTGCTTATCTGGCAGTTTTAAAGGATTGTGAAGAACACTGTTTGCATGAAGGGTCTGAGGTAAAAAGGCTGGGGGGTCTTCATGTGATTGGTACATCTCTACATGAGTCCCGAAGAATAGACAATCAGCTTCGTGGCAGAGCAGGAAGGCAGGGCGATCCAGGGTCAACAAGGTTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGACACTCAATGGGCTGTTAGCATTATATCAAAGATTACAAACGGCGAGGATCTTCCAATTGAAGGTGGTGCCATTGTGAAACAGCTCTTGGCATTGCAAATCAATGCAGAAAAGTTCTTCTTCGGCATAAGAAAGAACCTCGTTGAATTTGATGAAGTATTGGAGGTGCAACGAAAACAtgtttatgatctaaggcaGTTAATCTTAACTGGAGATGACGAAAGCTGTTCCCAACACATATTGCAGTACATGCAAGCAGTGGTGGATGAGATTGTCTTTAGTAACATTGATCCATTGAAGCATCCTCGTAGTTGGGGTTTGAGTAACCTCTTGAAAGAGTTCAAGGCAATTGGTGGAAAGCTGTTGCATGCAGAATCATTAGGAGGGATTAATGATGACGCTTTACTAAATTCACTTGGGCAACTGAATGAAGTGAATTCAGTTGATGTTGTCAACTTTTGCCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCAGGGGTATTCGCAGGAAGAGCTCTTCATTAAGACGGTGGCTTGCAATTTGCACTGATGATTTAATTGAGAACGGGAAGTATCGGACAACTTCAAATCTCCTTCGCAAGTATCTTGGAGATTTTCTAATTGCTTTGTATTTAGATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGTAAAAGAGATTGAGAGAGCTGTTCTTTTGAAAACTCTTGACTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGCTCTGCGGTGAATGTTAGAAGCTTCGGCCACAGAAATCCTCTGGAAGAATACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTCAGTGCAACTCGAAGGATTTATATGAAGTCTGTCAAAGTTACGGAGAAAATACATAGAGATGCTCACAAAAATGATTTGTATATTTGCATCCTATTACAGGGCAATCAAAGGAGCTGA 3177 0.4259 MATLSHPFPLFFSIQRTYHSNAFFIRPPPSFIRLPQRRFTPAFATTASIKEKIGGIHKTFTDFTSLNHWVVSDYFRLVNSVNAFEPRIQALSDDQLAAKTEEFRLRLKRGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAKRDAEWMGRVHRFLGLSVGLIQKGMKSEERRFNYRCDITYTNNSELGFDYLRDNLAGNSKQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASQEAARYPVAAKVAELLTQGIHYTVELKNNSVELTEEGITLAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVEYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQTPVIEVPTNLPNIRKDLPVQAFATARGKWEQVRREVEDIFRQGRPVLVGTTSVENSELLAALLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVVPFLTLEDPNSEFAGEAISEKMLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKTISFILGSVEMSLSYSLKELEELANEESEFYPLGPTVALAYLAVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTQWAVSIISKITNGEDLPIEGGAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFSNIDPLKHPRSWGLSNLLKEFKAIGGKLLHAESLGGINDDALLNSLGQLNEVNSVDVVNFCLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIENGKYRTTSNLLRKYLGDFLIALYLDVVEESGYDERHVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRIYMKSVKVTEKIHRDAHKNDLYICILLQGNQRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02839 1058 Gene3D - 454 760 IPR027417 -
Tsu08g02839 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 305 IPR014001 -
Tsu08g02839 1058 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 59 1033 - -
Tsu08g02839 1058 Gene3D - 285 405 - -
Tsu08g02839 1058 Pfam SecA preprotein cross-linking domain 291 395 IPR011130 GO:0016020|GO:0017038
Tsu08g02839 1058 ProSiteProfiles SecA family profile. 56 760 IPR014018 -
Tsu08g02839 1058 Gene3D - 76 452 IPR027417 -
Tsu08g02839 1058 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 59 1033 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 SUPERFAMILY Helical scaffold and wing domains of SecA 764 1025 IPR036266 -
Tsu08g02839 1058 Hamap Protein translocase subunit SecA [secA]. 55 1037 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 450 463 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 376 398 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 223 243 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 154 168 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 116 140 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 170 180 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 PRINTS SecA protein signature 413 430 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 SMART SecA_DEAD_2 60 439 IPR011115 GO:0005524|GO:0016020|GO:0017038
Tsu08g02839 1058 SMART SecA_PP_bind_2 284 395 IPR011130 GO:0016020|GO:0017038
Tsu08g02839 1058 ProSitePatterns SecA family signature. 539 554 IPR020937 GO:0006605|GO:0006886|GO:0016020
Tsu08g02839 1058 CDD SF2_C_secA 457 728 IPR044722 -
Tsu08g02839 1058 Pfam SecA DEAD-like domain 67 438 IPR011115 GO:0005524|GO:0016020|GO:0017038
Tsu08g02839 1058 Pfam SecA Wing and Scaffold domain 758 1029 IPR011116 GO:0016020|GO:0017038
Tsu08g02839 1058 Gene3D Helical scaffold and wing domains of SecA 907 1034 - -
Tsu08g02839 1058 Gene3D Helical scaffold and wing domains of SecA 763 878 - -
Tsu08g02839 1058 SUPERFAMILY Pre-protein crosslinking domain of SecA 283 404 IPR036670 GO:0016020|GO:0017038
Tsu08g02839 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 742 IPR027417 -
Tsu08g02839 1058 TIGRFAM secA: preprotein translocase, SecA subunit 81 854 IPR000185 GO:0005524|GO:0006605|GO:0006886
Tsu08g02839 1058 CDD DEXDc_SecA 95 451 - -
Tsu08g02839 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02839 Tsu-Chr8 43579624 43606743 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02839 K03070 - gmx:100793437 1729.15