Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02836 ATGATGAAATTCGCACCTCACTCAGATCGGGAGATGCAGATTCCAATTTTCAGTTCAGACTTCAGATCTCTCTGCCACACGCGATCCTCGTGTTTTAATAAACGCGCTCAACATTCTACAGTGAACACACAAGGGCAATCTCGTGTAACCGTTTTGGTATCTACCGGTGGCCGTGTTTGGATGGAGGAGTTACCGGAGTGTCCGGTGTGTCTTCAAAACTACGACGACGAAAACGCGATTCCACGAGTTCTATCATGCGGCCACACCGTTTGTGAAGCTTGTCTTGTTCAGCTTCATCAGCGATTTCCGAACACTATTCGTTGCCCGGCGTGTACACAGCTCGTTAAATACTCTCCTAAACAAGGTCCTTCTTCTCTTCCCAAAAACATCGATCTTCTTCGACTCTTCCTTCAACAACAAGACTCTACAGATAAGAATCAGTTGCGGAAATCGAATCAACGGTCCTCGATCAACTCGATCAACGATGAATATTCAGCTCGATTCTGGTCTGATGAGTTTTATGTTGCTTGGAAGGATTGGATTCTTCCGCACGACGCTATTTCGGTTGGTGATGATGGTTTTGGTTTGTTCAGTTCGAGTTCTAAGGGCAGGGTTTGCTTTGGGGTTAACCGTAGGGTGAGTCTTGTTCCTATTGTTACTTTGCCTACTGTTAGTGATTTGAAGTTTAAGTTTAGTTATGTTGCTTGGATTATTAAGTGTTTGGAGGGATTGAATGAGGTTGTGAGAGACGGTTTATGTTTGATTCTAGAAGCTTCCGTGAGGCGCGGTTGGTTTTGTAGGGTTTATGGGCTGTGGGGTGAGGTTAGTGATGGTACTTTGTATTTGGTGTGTGAGAGGCATTGTGGTAGGGTTTTGGACAAGTTTAGTGGATTGTGGAATGGGGATGGTTTGGAATTGGATAAAGGTAGGGTTTGTAGTTTTGCAATGATTGCTAAGGGTGTCATTGAAGCTGTGATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGATGTTTGGGACTTTCGTGTTTTTCTTTTGAGGAGCTTGGTGGCGTTTGTATTGATTTGAATGAGGTGTTGGCAATGGGAAGGAAGATTAGAGATGAGGTTTCTGGTTGTATGGGTGATGAACATGAAGCTATGTATATGGATATTTTGGACAATGAGATTTTCGTTAGCCCGGAGGTTTTGTCTAAGTTATCGAACAAGGGGGTTATTATCAGTCCAGAGAGTGGGGATTCACGATATCCAATTGGGTATGGCTCGGATGTGTGGTCATTGGCTTGTGTGTTGTTGCGGCTTCTTATTGGAAATGCATTCCCTCGGATTACTTTGGTAGTGAGTGAAGAGAATGGCCTTGTAGTTTTGGCTAGTTACATTTCTTGGGTGGAGAAAGTTAATTCtgttttggaagaaaaatttgGATCTGAGTACCTGTCACTTAAGCAGACTCTTTGCAAATGTTTGGACATCAATCCGGGAAGTCGTCCAGATGTGGTGGATGTAAGGAAATGCATTCAGGATGTGCTAGCCAAACATCAATTTGGTTTCTTGGGAAATGCAGAGATTACAGTAAATAGGAACAACATAGACCACCCTGTGATTCTTGCCATGTTGTTCCAATTGGTTGAGGAAAGTTCTAAGGAGCTGAGTGAACATGAGGTGAAAGAAGATGGTAGTCAACCTGATTTTCTTCAAGGTGCAGAAAACAAATCCGATGAAGACTTTGTTGCTAGCTTATCTAACAGAATGACTGGAATGACTGAGCTTAAAGATCTGCAAGGCCATCTTGGTTGTATCACTGGATTAGCTGTAGGAGGGGGATATCTGTTTAGCTCCTCTTTTGATAAAACTGTTCGTGTATGGTCCTTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTTGATGACGAAGAACCATTGTGTATAAGTGGTGATGGTGGTGGGGGCTTATTTGTATGGGGGATTACTGCACCTCTCAGGCAAGATCCCTTAAGGAAATGGTATGAGCAGAAGGATTGGCGTTTTAGTGGTATCCATTCTTTGGCTGCTTTCGGAAATCTTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTCAAGGATGGAACTTTGATGTGCACAATGAATGGCCACCAATCTGTAGTTTCCACACTTTCAGTATGTGATGGTGTTCTTTACAGTGGTAGTTGGGATGGAACCATCCGATTGTGGAGTCTTAATGATCACAGCCCGTTGGCGGTACTAGGGGAAAATTTGCCTGGAGAGATGAAGTCTATCCTGGCTATTACTGCTAACAGGGATTTTCTGGTTGCAGCATATGAGAATGGATGCATAAAGGTCTGGAGAAATGACGTGTTCATGAATTCCAAAACATTGCATAGTGGTGCCATTTTTGCTATGAGTATGCATGGAAAATGGCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCGGGAGATGAGTTAGAATTGAATGTCAATGCATTTGGATCAATTCCTTCCAGTTCTGTTGTGACAGCTATATTATGCAGCCGAGAAAAACTTTATGTTGGATATGGTGACAAGTCTATCAAGGTATCCTTCTTCTTTCAATGA 2649 0.4228 MMKFAPHSDREMQIPIFSSDFRSLCHTRSSCFNKRAQHSTVNTQGQSRVTVLVSTGGRVWMEELPECPVCLQNYDDENAIPRVLSCGHTVCEACLVQLHQRFPNTIRCPACTQLVKYSPKQGPSSLPKNIDLLRLFLQQQDSTDKNQLRKSNQRSSINSINDEYSARFWSDEFYVAWKDWILPHDAISVGDDGFGLFSSSSKGRVCFGVNRRVSLVPIVTLPTVSDLKFKFSYVAWIIKCLEGLNEVVRDGLCLILEASVRRGWFCRVYGLWGEVSDGTLYLVCERHCGRVLDKFSGLWNGDGLELDKGRVCSFAMIAKGVIEAVIALNLEGLVAGCLGLSCFSFEELGGVCIDLNEVLAMGRKIRDEVSGCMGDEHEAMYMDILDNEIFVSPEVLSKLSNKGVIISPESGDSRYPIGYGSDVWSLACVLLRLLIGNAFPRITLVVSEENGLVVLASYISWVEKVNSVLEEKFGSEYLSLKQTLCKCLDINPGSRPDVVDVRKCIQDVLAKHQFGFLGNAEITVNRNNIDHPVILAMLFQLVEESSKELSEHEVKEDGSQPDFLQGAENKSDEDFVASLSNRMTGMTELKDLQGHLGCITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDDEEPLCISGDGGGGLFVWGITAPLRQDPLRKWYEQKDWRFSGIHSLAAFGNLLYTGSGDRTIKAWSFKDGTLMCTMNGHQSVVSTLSVCDGVLYSGSWDGTIRLWSLNDHSPLAVLGENLPGEMKSILAITANRDFLVAAYENGCIKVWRNDVFMNSKTLHSGAIFAMSMHGKWLYTGGWDKNVNIQELSGDELELNVNAFGSIPSSSVVTAILCSREKLYVGYGDKSIKVSFFFQ 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02836 882 Pfam RING-type zinc-finger 67 109 IPR027370 -
Tsu08g02836 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 631 IPR001680 GO:0005515
Tsu08g02836 882 PANTHER - 63 877 IPR044715 -
Tsu08g02836 882 ProSiteProfiles Zinc finger RING-type profile. 67 112 IPR001841 -
Tsu08g02836 882 SMART WD40_4 755 796 IPR001680 GO:0005515
Tsu08g02836 882 SMART WD40_4 715 752 IPR001680 GO:0005515
Tsu08g02836 882 SMART WD40_4 585 622 IPR001680 GO:0005515
Tsu08g02836 882 SMART WD40_4 625 665 IPR001680 GO:0005515
Tsu08g02836 882 SMART WD40_4 797 834 IPR001680 GO:0005515
Tsu08g02836 882 SMART WD40_4 671 712 IPR001680 GO:0005515
Tsu08g02836 882 Gene3D - 561 673 IPR015943 GO:0005515
Tsu08g02836 882 SUPERFAMILY RING/U-box 60 119 - -
Tsu08g02836 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 722 761 IPR001680 GO:0005515
Tsu08g02836 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 149 IPR013083 -
Tsu08g02836 882 Gene3D - 674 878 IPR015943 GO:0005515
Tsu08g02836 882 CDD RING-HC_TRIM32_C-VII 66 112 - -
Tsu08g02836 882 Gene3D Transferase(Phosphotransferase) domain 1 375 514 - -
Tsu08g02836 882 SUPERFAMILY WD40 repeat-like 584 872 IPR036322 GO:0005515
Tsu08g02836 882 PRINTS G protein beta WD-40 repeat signature 699 713 IPR020472 -
Tsu08g02836 882 PRINTS G protein beta WD-40 repeat signature 739 753 IPR020472 -
Tsu08g02836 882 PRINTS G protein beta WD-40 repeat signature 609 623 IPR020472 -
Tsu08g02836 882 SMART ring_2 67 111 IPR001841 -
Tsu08g02836 882 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 63 877 - -
Tsu08g02836 882 Pfam WD domain, G-beta repeat 589 622 IPR001680 GO:0005515
Tsu08g02836 882 Pfam WD domain, G-beta repeat 718 752 IPR001680 GO:0005515
Tsu08g02836 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 721 IPR001680 GO:0005515
Tsu08g02836 882 SUPERFAMILY Protein kinase-like (PK-like) 265 512 IPR011009 -
Tsu08g02836 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 722 754 - -
Tsu08g02836 882 ProSitePatterns Zinc finger RING-type signature. 86 95 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02836 Tsu-Chr8 43546612 43551519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02836 587 824 Acyl Lipid Metabolism Gene Families AT3G18860 28.458 2.09e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02836 - K03070 lja:Lj1g3v0874380.1 1164.06