Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02816 ATGCCAGCTTCTCCTTCAGATAATCGAACCAAATGGAGGAAAAGGAAGAGAGAATCACAAATCACGAAACGTCAACAGAAAcatcaagaggaagaagaagacgaagacgaAGAAAATCCCAATGCCGAAGAAGAAAACGAACGTGACTACGATTCAGAGGACCAACACAACCAAAACCACCCTAATTCTCAACCAAAACAAGAAATCGAGATTCTATCTGATCACGGTGTTCAGATTTCGCACTTTCCGATGGTTATTAAACGTGCTGTTAATCGTCCTCATTCTTCTGTCACTTCAATTGTTGCTCTTGAACGAGCTATGGAGTTGGGAGATACCAAAGCTCAGCTTCAGAATCAAAATCCTCCGTTTCTGGAGAATATTTCTCATGGACAGCTTCAAGCGCTCTCGTTTGTTCCTTCTGATAGTCTCTCTTTGGATCAGGATCGTGCTGATTCGTCTTATGTTATCACTCCACCACCTATTTTGGAAGGTCGCGGCGTTGTTAAACGCTTTGGAAGTAGGGTTCTTGTGCTTCCAATGCATTcagATTGGTTTTCACCTGGAACTGTGCATCGGTTAGAGAGACAAGCAGTGCCTCATTTCTTTTCAGGGAAAACGCAGGATCTTAGTCCTGAAAAGTACATGGAATGTAGGAACTATATTGTTGCATTGTATATGGAGGAGCCGCGGAAAAGGATTACCGCTTCAGATTGCCAGGGGTTGCAGGTTGGGGTTGATCATGAAGATTTGTCTCGAATTGTTCGGTTTCTTGACCACTGGGGAATTATCAATTATTGTGCCCGGATGCCAAGTCATGAGCCTCCAAATGCTGTCTCATGCTTGAAGGAGGATACTGGTGGAGAGCTCCGTGTGCCATCAGAGGCCTTGAAGTCCATAGATAGTTTGATCAAATTTGATAAGCCCAACTGTAAGCTCAAAGCAGAAGAAGTTTATTCACCACCGACAACAAATAGCTCGGATGTCCCTGATCTGGACGGCAGAATAAGAGAGCACCTGTCTGAAAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGCTGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTTTGCACTGATTGCTTTCATGATGGGAAATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGGTGGACTCAACAAGGGATTATGGTGAATTAGATGGGGAAAGTTGGACTGATCAAGAGACCTTGTTGCTGCTTGAAGCAGTGGAGATTTACCATgagaattggaatgaaattgcTGACCATGTTGGTACCAAGTCAAAAGCACAATgcattcttcattttcttcgtCTACCCATGGAAGACGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCCGTGTTATCCAATGTGATGAATAGAGATGATAATGGAAGATCACATCATTACTCAAACGGAGATTCTGCAGGAGCTGTCCATCAAAGCAGAGATTCTGACAGCCGCCTGCCTTTTGCTAACTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCATCTGCGGTTGGACCAAGAGTAGCAGCTTCTTGTGCTCACGCAGCATTATCGGTGTTGTCAGAGGATAACACTGGCTCCCAGACGGAAGCATCAGGACATGATAATAGGACAAATCCAGAAAACATACATTGTAGAGATGGTGGCTCTCGTGGAGAAACTGCAATTTCAAATAATCATAATGAGGATAAGGCAAAAGCACCTTGTTCGCGGGATCAAAGTGAGGGTAGGGCAACCCCACTCTCTGCTGAAAAAGTTAAAGGTGCAGCTAAAGCAGGTCTCTCTGCTGCAGCTATGAAAGCTAAATTGTTTGCTGATCACGAAGAACGAGAAATTCAGAGATTGTGTGCTAATATAATTAATCATCAGTTGAAAAGATTGGAATTGAAGTTGAAACAGTTTGCAGAAATTGAAACTTTGTTGATGAAGGAATGTGAGCAAGTGGAAAGAGCAAAGCAGAGGTTTGCTGCTGAGCGTACCCGCATTATATCGGCACGTTTTGGAACTGCAGGAACCATGCCTGCCATGAATGCATCAGGTGTTGGTCCTTCAATGTCTAGTAATGGCAATAATAGGCCGCAAATGATCTCTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTTTGGCAACAACCAACAAGTTCATCCACACATGTCCTTTGCCCCAAGACCTTCAATGTTTGGGCTGGGTCAAAGGTTACCCCTATCTATGATACAACAATCACAATCAGGTTCTTCAGCTCCCATGTTCAACGCCCCTAGTAATGTGCAACCCGGTACCAGTCATCCATTGTTGAGGCCCGTGTCAGGAACTAATTCTGGTTTAGGATAA 2364 0.423 MPASPSDNRTKWRKRKRESQITKRQQKHQEEEEDEDEENPNAEEENERDYDSEDQHNQNHPNSQPKQEIEILSDHGVQISHFPMVIKRAVNRPHSSVTSIVALERAMELGDTKAQLQNQNPPFLENISHGQLQALSFVPSDSLSLDQDRADSSYVITPPPILEGRGVVKRFGSRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKTQDLSPEKYMECRNYIVALYMEEPRKRITASDCQGLQVGVDHEDLSRIVRFLDHWGIINYCARMPSHEPPNAVSCLKEDTGGELRVPSEALKSIDSLIKFDKPNCKLKAEEVYSPPTTNSSDVPDLDGRIREHLSENHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVVGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAVEIYHENWNEIADHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSVLSNVMNRDDNGRSHHYSNGDSAGAVHQSRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSEDNTGSQTEASGHDNRTNPENIHCRDGGSRGETAISNNHNEDKAKAPCSRDQSEGRATPLSAEKVKGAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRIISARFGTAGTMPAMNASGVGPSMSSNGNNRPQMISASPSQPSISGFGNNQQVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSGSSAPMFNAPSNVQPGTSHPLLRPVSGTNSGLG 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02816 787 Pfam SWIRM domain 179 265 IPR007526 GO:0005515
Tsu08g02816 787 MobiDBLite consensus disorder prediction 533 595 - -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 464 496 - -
Tsu08g02816 787 CDD SANT 401 443 IPR001005 -
Tsu08g02816 787 Gene3D - 182 269 IPR036388 -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 476 496 - -
Tsu08g02816 787 ProSiteProfiles SWIRM domain profile. 176 274 IPR007526 GO:0005515
Tsu08g02816 787 Pfam SWIRM-associated region 1 603 679 IPR032451 -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 533 547 - -
Tsu08g02816 787 ProSiteProfiles SANT domain profile. 397 448 IPR017884 -
Tsu08g02816 787 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 59 786 - -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 31 50 - -
Tsu08g02816 787 SMART sant 398 446 IPR001005 -
Tsu08g02816 787 SUPERFAMILY Homeodomain-like 399 452 IPR009057 -
Tsu08g02816 787 Pfam Myb-like DNA-binding domain 401 443 IPR001005 -
Tsu08g02816 787 Coils Coil 25 45 - -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 750 787 - -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 568 582 - -
Tsu08g02816 787 ProSiteProfiles Zinc finger ZZ-type profile. 339 393 IPR000433 GO:0008270
Tsu08g02816 787 ProSiteProfiles Myb-like domain profile. 401 444 IPR001005 -
Tsu08g02816 787 MobiDBLite consensus disorder prediction 1 65 - -
Tsu08g02816 787 PANTHER SWI/SNF COMPLEX-RELATED 59 786 - -
Tsu08g02816 787 SUPERFAMILY Homeodomain-like 175 268 IPR009057 -
Tsu08g02816 787 Gene3D - 398 448 - -
Tsu08g02816 787 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 401 449 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02816 Tsu-Chr8 43352241 43360245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02816 344 440 EF-hand Containing Proteins AT3G07740 34.906 1.08e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02816 K11649 - gmx:100780440 1263.83