Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02806 ATGGCGAAAAGCGTTGCGATTTTCGGTTTATTGTTTTCTCTTCTTGTTTTCGTTCCTTCTCAGATCTCTGCTGAGGAATCTGAGGCTAAGGAATTTGTTCTTACATTGGATAATACTAACTTCCATGATACTATTAGCAAGCACGATTTCATCGTCGTTGAGTTTTATGCACCATGGTGTGGACACTGTAAGAAGCTTGCACCAGAGTATGAGAAAGCTGCTTCTATCTTGAGCAGTCATGAAACTCCAATTGTTTTGGCTAAAGTTGATGCCAATGAGGAGAAGAACAGGGACCTCGCATCTGAATATGATGTTAAGGGATTCCCAACAATTAAGATTTTGAGGAATGGTGGAAAGAACATTCAGGAATACAAGGGTCCACGTGAAGCTGATGGTATCGTTGAATATTTGAAGAAACAAAGTGGACCTGCAACAACAGAAATTAAATCTGCTGATGAAGCCAGTGCTTTTATCGGTGAAAACAAAGTTGTTATTATTGGAGTTTTCCCTAAATTCTCTGGGGAGGAGTTTGATAACTTTACTGCATTAGCAGAGAAGTTGCGCTCTGACTATGACTTCGGTCACACTTTGAATGCCAAACACCTTCCAAAGGGAGAATCATCAGTGTCCGGTCCCGTAGTTAGGTTATTTAAGCCATTTGACGAGCTCTTTGTTGACTCCAAGGAATTCGACGTTGAAGCTCTAGAGAAATTCATTGAAGAATCCAGTATCCCCATTGTGACTGTCTTTAACAACGAACCAAGCAACCACCCTTTTGTTGTCAAATTCTTTAACACTCCCAACGCAAAGgcAATGTTGTTCATCAACTTTACTGCCGAAGGTGCTGAATCTTTCAAATCAAAATACCGTGAAACTGCTGAGCTATACAAACAACAAGGAATTAGCTTTCTCATCGGAGATGTTGAGTCCAGTCAAGGTGCCTTCCAGTATTTTGGACTAAAGGAAGACCAAGTGCCTCTAATTATTATTCAGCATAACGATGGCAAGAAATTTTTCAAGCCTAATTTGGCACCTGAACACGTTGCAACTTGGTTGAAGTCATACAAGGATGGAAATATTGCACCATATGTTAAGTCTGAACCTATTCCTGAAACTAACAACGAACCTGTTAAAGTGGTTGTTGGGGAAACTCTTCAGGATATAGTTTTCAACTCAGGGAAAAATGTTTTGCTTGAGTTTTATGCTCCTTGGTGTGGTCACTGCAAACAGTTGGCTCCAATCTTGGATGAAGTTGCTGTCTCATTCCAAAATGATGCTGATGTTGTTATTGCAAAATTGGATGCAACTGCCAACGATATCCCAAGCGAAACCTTTGAGGTCCAGGGTTATCCAACTTTGTACTTCAGGTCAGCAAGTGGAAAAATTTCACAATACGACGGCGGTAGGACAAAGGAAGACATCATAGAATTCATTGAAAAGAACAAGGATAAACCTGCTGCTGCTGCTCATCAAGAAGCAGAACAACCAAAGGCCGCTGCTCAGCAAGAAGTAGTAGAACAACCTAAAGATGAGCTTTGA 1539 0.4068 MAKSVAIFGLLFSLLVFVPSQISAEESEAKEFVLTLDNTNFHDTISKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSSHETPIVLAKVDANEEKNRDLASEYDVKGFPTIKILRNGGKNIQEYKGPREADGIVEYLKKQSGPATTEIKSADEASAFIGENKVVIIGVFPKFSGEEFDNFTALAEKLRSDYDFGHTLNAKHLPKGESSVSGPVVRLFKPFDELFVDSKEFDVEALEKFIEESSIPIVTVFNNEPSNHPFVVKFFNTPNAKAMLFINFTAEGAESFKSKYRETAELYKQQGISFLIGDVESSQGAFQYFGLKEDQVPLIIIQHNDGKKFFKPNLAPEHVATWLKSYKDGNIAPYVKSEPIPETNNEPVKVVVGETLQDIVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSFQNDADVVIAKLDATANDIPSETFEVQGYPTLYFRSASGKISQYDGGRTKEDIIEFIEKNKDKPAAAAHQEAEQPKAAAQQEVVEQPKDEL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02806 512 ProSiteProfiles Thioredoxin domain profile. 23 142 IPR013766 -
Tsu08g02806 512 CDD PDI_b_family 146 241 - -
Tsu08g02806 512 ProSiteProfiles Thioredoxin domain profile. 355 483 IPR013766 -
Tsu08g02806 512 PANTHER PROTEIN DISULFIDE ISOMERASE 10 498 - -
Tsu08g02806 512 CDD PDI_a_family 34 137 - -
Tsu08g02806 512 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Tsu08g02806 512 Pfam Thioredoxin-like domain 169 353 - -
Tsu08g02806 512 Pfam Thioredoxin 377 480 IPR013766 -
Tsu08g02806 512 Pfam Thioredoxin 33 139 IPR013766 -
Tsu08g02806 512 TIGRFAM ER_PDI_fam: protein disulfide isomerase 33 512 IPR005792 GO:0003756
Tsu08g02806 512 PRINTS Thioredoxin family signature 51 59 - -
Tsu08g02806 512 PRINTS Thioredoxin family signature 59 68 - -
Tsu08g02806 512 PRINTS Thioredoxin family signature 104 115 - -
Tsu08g02806 512 SUPERFAMILY Thioredoxin-like 33 143 IPR036249 -
Tsu08g02806 512 SUPERFAMILY Thioredoxin-like 242 374 IPR036249 -
Tsu08g02806 512 Gene3D Glutaredoxin 246 370 - -
Tsu08g02806 512 Gene3D Glutaredoxin 142 245 - -
Tsu08g02806 512 SUPERFAMILY Thioredoxin-like 146 245 IPR036249 -
Tsu08g02806 512 TIGRFAM pdi_dom: protein disulfide-isomerase domain 381 481 IPR005788 GO:0003756
Tsu08g02806 512 TIGRFAM pdi_dom: protein disulfide-isomerase domain 37 140 IPR005788 GO:0003756
Tsu08g02806 512 MobiDBLite consensus disorder prediction 483 512 - -
Tsu08g02806 512 PANTHER PROTEIN DISULFIDE-ISOMERASE 10 498 - -
Tsu08g02806 512 CDD PDI_b'_family 260 356 - -
Tsu08g02806 512 Gene3D Glutaredoxin 20 141 - -
Tsu08g02806 512 SUPERFAMILY Thioredoxin-like 346 483 IPR036249 -
Tsu08g02806 512 Gene3D Glutaredoxin 371 486 - -
Tsu08g02806 512 CDD PDI_a_PDI_a'_C 376 478 - -
Tsu08g02806 512 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02806 Tsu-Chr8 43176805 43180922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02806 K09580 - gmx:100170705 864.374