Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02700 ATGATCAAAGGAAAAGATGTATACAATATTATTGAGAGTATCATGCCCCTATATGTGGCCATGCTATTAGGCTATGGTTCAATTAAATGGTGGAAAATCTTCACACCTGACCAATGTGTTGGTATAAACCGTTTTGTGTCAATGTTTGCAGTTCCAACACTTAGTTTTATTTACATATCTCCAATTAACCCTTACCATATGAATTGGAGATTAATAGTTGCTGACACACTTCAAAAAATTGTGACATTATTTTGTCTAATTTTATGGAACATTTTTACAAAACGTGGTGGTTTTGATTGGTCTATAACAATTTTTTCACTTATTAATTTGCCAAACACACTTATTGTTGGGATCCCTCTTTTGAATGCTATGTATGGAGAATTTACCACATCACTTTTGATCCAAATTTTGTTCATGCAAAGTGTTTTATGGTATAgtattttattgataatgtaTGAATATAGAGCTGCTAAGCTTTTTATTTCTCAACAATTTGTTGAGAATAATGAAGGGTCACAAAAGGTTGAAATTGAATCAAATGTTGATGTAGAATTGGGAGAAATTGGTAATAATAGTGTTAAGTCATCTCATTCAACACCTAAAGTGCCAAATCTTACTAGGGTTGAGTTATATTCAAGCTACACAAATAGTCCTCAAAAtaatgattttgaagaaatgttAGATATATGCAAAAGATTTCATAAGAGTAGGAGTTGCACTAGTATGGGTGGTATGAAGATTTCTCCTTACCCAAATCTAAAATCAAATTCAGAAAAAATCATTGGTAATACAAAGATAAATTTTAGTGGTCGCTTTGGCATGCCTCAAAATATTGAAGCATCAAAAGGTGTTAATGAATTGATTGAAAAGAATTCTAGTACAAAAGTGATTGAAGAGGAAGAGCATGAGAACGAGGAGATGCATGAAGAAGGAATTATAAACAATGAACAACAAATGCTACCTAGTCGTGGCATGATGATAAAGCTCATTCTTGTTAGGGTATGGAGGAAGCTCTCAAGAAATCCTAATCTCTATGCTCCAGTTCTTGGCATTGTTTGGGCTCTCATAGCATCAAGGTGGAACATCAAAATGCCATTAATCATACATGATTCTATTACAATTATTTCTCACACTGGACTAGGAATGTCCATGTTTAGTCTAGGCATATTCATGGCATTACAACCCAAAATCATTGCTTGTGGAAAAACTTCAGCATCAATGTCTATGGTACTTAAATTCTTGGTTGGTCCATTATTGTTTGCTGCAACATCTGCAGCTGTTGGTATTCGTGGAGTTGTTTTTAAAGTAGGAATTATTCagGCTGCTCTTCCACAAGGTATTGTTCCCTTTGTTTTCGCCAAAGAGTACAATCTCCACGCTGAAATATTTAACGCATCGGTTTCTCTTGGATTGGCACTTGCATTCCCTATAACAATACTCTACTATGTGATTCTTGGTGCTTGA 1464 0.3367 MIKGKDVYNIIESIMPLYVAMLLGYGSIKWWKIFTPDQCVGINRFVSMFAVPTLSFIYISPINPYHMNWRLIVADTLQKIVTLFCLILWNIFTKRGGFDWSITIFSLINLPNTLIVGIPLLNAMYGEFTTSLLIQILFMQSVLWYSILLIMYEYRAAKLFISQQFVENNEGSQKVEIESNVDVELGEIGNNSVKSSHSTPKVPNLTRVELYSSYTNSPQNNDFEEMLDICKRFHKSRSCTSMGGMKISPYPNLKSNSEKIIGNTKINFSGRFGMPQNIEASKGVNELIEKNSSTKVIEEEEHENEEMHEEGIINNEQQMLPSRGMMIKLILVRVWRKLSRNPNLYAPVLGIVWALIASRWNIKMPLIIHDSITIISHTGLGMSMFSLGIFMALQPKIIACGKTSASMSMVLKFLVGPLLFAATSAAVGIRGVVFKVGIIQAALPQGIVPFVFAKEYNLHAEIFNASVSLGLALAFPITILYYVILGA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02700 487 Pfam Membrane transport protein 10 482 IPR004776 GO:0016021|GO:0055085
Tsu08g02700 487 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 289 486 - -
Tsu08g02700 487 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 182 - -
Tsu08g02700 487 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 289 486 IPR033526 GO:0010315|GO:0010329
Tsu08g02700 487 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 182 IPR033526 GO:0010315|GO:0010329
Tsu08g02700 487 TIGRFAM 2a69: auxin efflux carrier 1 486 IPR014024 -
Tsu08g02700 487 Coils Coil 290 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02700 Tsu-Chr8 41181894 41185228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02700 1 464 Organic Solute Cotransporters AT1G77110 39.350 6.28e-122 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02700 K13947 - gmx:100788935 438.728