Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02665 ATGGAGACTCCTCCTTCAACACAAGGTGGTgtggtgaagaagaaggaaacaAGAGGTAGAAAACCTAAAccaaaggaagaaaaaaaagatgaacaacaacaacaacatgtgAAATCACCAAGAGAATCGAAAAagtcacaacaacatcaacaaaatcaacaacagcaacaacaacaacaacaacaacaacaagctTCTGTTGATGAGAAATATACTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAATCATAATCTTGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAAGCTACTTATAAGAATCGACAACGGTTATATCTTTCTGAGCAGacTGATGGTAGTGTTCCGAATACTTTGGTGATTGCGAATTGTGAAGTTGTGAAGACTAGGGTTGCAGCTGCAGAGCATATTTCGcagtTTAACGAAGAGGCCCGCTCTCCATTTGTGAAGAAGTACAAGACTATCATACATCCAGGAGAGGTGAACAGAATTAGAGAGTTGCCACAAAATTCTAAGATTGTGGCTACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAATTCTCGCCCTGATTTGATATTGACCGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTGCTTTCAGGAGGAAAGGATAAAACAGTGGTGTTGTGGAGTATTGAAGATCATGTAACATCTGCTGCTACGGACTCCAAATCCGGTGGATCCATTATCAAGCAAAACTCTAAATCTGGGGAAGGCAATGAGAAAAATGTTGATAGCCCTTCTGTCGGACCAAGAGGTATCTACTCTGGGCATGATGATACTGTTGAAGATGTAGCTTTTTGCCCTTCTAGTGCGCAGGAATTCTGTAGTGTTGGAGACGATTCTCGTCTCATATTATGGGACGCACGTGTTGGCTCAAGTCCTGCGGTTAAGGTTGAAAAAGCTCACAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATAATAATCTGATTCTTACTGGGTCGGCGGATAATACTGTTCGCTTGTTCGATCGTCGCAATCTCACCTCCAATGGAGTTGGATCACCCATCCATATATTTGAGGCTCATAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAAGCATCCATATTTGGAAGTTCAGCAGAAGACGGTCTCTTAAACATTTGGGATTATGAGAAGGTTGGTAAAAAGATTGAGCGAGCTGGAAAAACAATAAATTCTCCTCCAGGGCTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTCCACTGGAATGCATATGATCCATGGACAATTGTTAGTGTGTCCGATGATTGTGAAAGTACTGGCGGAGGAGGAACATTGCAGATATGGCGCATGAGTGACTTACTCTACAGACCAGAGGACGAGGTTTTGGAAGAGCTGGAGAAATTCAAAGCTCATGTGGTGGCTTGTGCTGCAAAGACCGAAAAGGCCGAAAAATAA 1569 0.4003 METPPSTQGGVVKKKETRGRKPKPKEEKKDEQQQQHVKSPRESKKSQQHQQNQQQQQQQQQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSAATDSKSGGSIIKQNSKSGEGNEKNVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFCSVGDDSRLILWDARVGSSPAVKVEKAHNADLHCVDWNPHDNNLILTGSADNTVRLFDRRNLTSNGVGSPIHIFEAHKAAVLCVQWSPDKASIFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLEELEKFKAHVVACAAKTEKAEK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02665 522 Pfam WD domain, G-beta repeat 341 373 IPR001680 GO:0005515
Tsu08g02665 522 Pfam WD domain, G-beta repeat 383 422 IPR001680 GO:0005515
Tsu08g02665 522 Pfam WD domain, G-beta repeat 216 251 IPR001680 GO:0005515
Tsu08g02665 522 Pfam WD domain, G-beta repeat 293 328 IPR001680 GO:0005515
Tsu08g02665 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 373 - -
Tsu08g02665 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 424 IPR001680 GO:0005515
Tsu08g02665 522 SMART WD40_4 157 196 IPR001680 GO:0005515
Tsu08g02665 522 SMART WD40_4 211 251 IPR001680 GO:0005515
Tsu08g02665 522 SMART WD40_4 333 373 IPR001680 GO:0005515
Tsu08g02665 522 SMART WD40_4 440 487 IPR001680 GO:0005515
Tsu08g02665 522 SMART WD40_4 288 328 IPR001680 GO:0005515
Tsu08g02665 522 SMART WD40_4 382 422 IPR001680 GO:0005515
Tsu08g02665 522 MobiDBLite consensus disorder prediction 260 283 - -
Tsu08g02665 522 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 69 135 IPR022052 -
Tsu08g02665 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 328 - -
Tsu08g02665 522 PANTHER WD40 REPEAT FAMILY 42 516 - -
Tsu08g02665 522 MobiDBLite consensus disorder prediction 260 295 - -
Tsu08g02665 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 424 - -
Tsu08g02665 522 MobiDBLite consensus disorder prediction 46 64 - -
Tsu08g02665 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 373 IPR001680 GO:0005515
Tsu08g02665 522 SUPERFAMILY WD40 repeat-like 156 489 IPR036322 GO:0005515
Tsu08g02665 522 MobiDBLite consensus disorder prediction 1 64 - -
Tsu08g02665 522 Gene3D - 40 505 IPR015943 GO:0005515
Tsu08g02665 522 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 42 516 - -
Tsu08g02665 522 MobiDBLite consensus disorder prediction 20 45 - -
Tsu08g02665 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 337 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02665 Tsu-Chr8 40528349 40534432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02665 164 426 Miscellaneous Gene Families AT5G08390 24.723 1.97e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02665 K10752 - gmx:100779302 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02665 08 40528349 40534432 Tsu08g02665 08 40528349 40534432 ECH