Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02477 ATGATAGAACAAGGACAAATATTGGACAAAGTTTTCTCTATTTGGCTAAATAAGGATCCAATGGCTGAGAAAGGGGGTGAGATTGTCTTTGGTGGTATGGACAAGAGGCATTTTAGAGGTGACCATAGTTACTTTCCAATTTCTCAAGAGGGTTATTGGCAGATTGAAATGGGAGATATTCTACTTGGAAATAATACAACAGGTTTATGTGAGAGTGGATGTGCTGCAATAGTGGACTCAGGAACATCATTAATTGCTGGTCCAACGGGTGTTGTGACTCAAATTAATCATGCAATTGGAACAGAAGGATATGTTAGTTTTGAATGCAAAGACATTGTCCATAACTATGGGAATTTGATATGGGAAAACTTGATTTTAGGGTTAAATCCTGAAATCTTATGTGTTGACATTGGACTTTGTTCAAATAATGGATTTCAAAGAATGAATGATGTTATTGAAACAGTGGTGCATAATGAAAGTAGGGATGGATCAGCAACATTGGAGAGTCCCTTTTGTAGTTTTTGCAATAATATTGTCCTTTGGATTCAAGTTCAGATTAAGCAAAGCAATGTAAaggaaaaagttttaaaacatgtGGATGAGCTTTGCGAGAGGCTCCCGAATCCAGTTGGAGAATCATTTATAAACTGcagtagcatctcaagtatgcCACACATTACATTCACAATTGGAAACAAattgttttctctctctccagAACAGTATGTTCGTAGAGTTGAATCAGATGACGAAGATTGTTCCCCTGTGTGCTATAGCGGTTTTGTTGCTCTAGATGCGCCTTCACCACAGGGTCCCCTCTGGGTTGTTGGAGACATTTTCTTGCAGGCATATCACACAGTGTTTGACTATGCCAATCTCCGTATAGGATTTGCAGAATCTAGATAG 906 0.3598 MIEQGQILDKVFSIWLNKDPMAEKGGEIVFGGMDKRHFRGDHSYFPISQEGYWQIEMGDILLGNNTTGLCESGCAAIVDSGTSLIAGPTGVVTQINHAIGTEGYVSFECKDIVHNYGNLIWENLILGLNPEILCVDIGLCSNNGFQRMNDVIETVVHNESRDGSATLESPFCSFCNNIVLWIQVQIKQSNVKEKVLKHVDELCERLPNPVGESFINCSSISSMPHITFTIGNKLFSLSPEQYVRRVESDDEDCSPVCYSGFVALDAPSPQGPLWVVGDIFLQAYHTVFDYANLRIGFAESR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02477 301 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 1 300 - -
Tsu08g02477 301 Gene3D - 104 207 - -
Tsu08g02477 301 SUPERFAMILY Acid proteases 1 300 IPR021109 -
Tsu08g02477 301 Pfam Saposin-like type B, region 1 170 207 IPR007856 GO:0006629
Tsu08g02477 301 PRINTS Pepsin (A1) aspartic protease family signature 26 39 IPR001461 GO:0004190|GO:0006508
Tsu08g02477 301 PRINTS Pepsin (A1) aspartic protease family signature 76 87 IPR001461 GO:0004190|GO:0006508
Tsu08g02477 301 PRINTS Pepsin (A1) aspartic protease family signature 274 289 IPR001461 GO:0004190|GO:0006508
Tsu08g02477 301 SUPERFAMILY Saposin 106 207 IPR011001 -
Tsu08g02477 301 Gene3D Acid Proteases 36 300 IPR021109 -
Tsu08g02477 301 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 76 87 IPR001969 GO:0004190|GO:0006508
Tsu08g02477 301 ProSiteProfiles Peptidase family A1 domain profile. 1 298 IPR033121 -
Tsu08g02477 301 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 1 300 IPR001461 GO:0004190|GO:0006508
Tsu08g02477 301 ProSiteProfiles Saposin B type domain profile. 104 144 IPR008139 -
Tsu08g02477 301 Pfam Saposin-like type B, region 2 108 140 IPR008138 -
Tsu08g02477 301 Gene3D Acid Proteases 1 35 IPR021109 -
Tsu08g02477 301 ProSiteProfiles Saposin B type domain profile. 168 209 IPR008139 -
Tsu08g02477 301 Pfam Eukaryotic aspartyl protease 1 299 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02477 Tsu-Chr8 36803726 36809395 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02477 K08245 - gmx:100500551 486.493