Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02285 ATGGTAGCTATGGCAACCGCAAAGAGAATCGAAACCTTCGAAGATTTCGTTAAAGTTCACGGAATTTTACTCGCCGCGTCGGGGTTGCCGGAGTCACTTCACCGCCGTCTCTTCCAGAAACTCTCCACTGAAACCTTTGACGGCGGCGAACATTTCCAGATCGAACCTTGTGAAGATAACCGCATGAGACGCCTCGTTTTGACGTCGGATTCCATGGCTAAAAACTCCAATGTCTTCCTCATTGATCATGCTTGGACTTTCAGACTCTCCGACGCTTACAAACAGCTGCGTGAGGTTCCGGGATTAGCAGAGAGGATGAGTTCATTGATGTGTGTGGATATTGACACGAATTTGGATGGTGAAAATGATGtgaatgatgttgatgatgaagcTTCGCGAGAGAAGCTCGGTGTTGTGGAAATAGTGGAGAGTGAGGTTTTAGAGGCAAAAGAGAAAGGTGATGGTACATTGAGATGGTTGGAGCTTGATGATCTtgatattgatgatgatatgttTCTCTCATTGGACTTACCTGCTAGATTTCCGAATTTAGTGGCACTTAGCCTATATGGAAACAAGCTTACAAGCGCTGAACTGGTTGTTCAAGAAGTTACCAAATTTAAACATCTCAAAGGACTCTGGCTGAACAATAATCCGGTTCTTAAAAATGGCGATGGTGAGCTTGCAGATATTTTTCTCAAGGAATTACCAGAACTGGAGATTTATAATTCAACATTCACAAGAAATTTTGCGGAGTGGGCGTTGGGCTTTTGTGCAGATATATATGGAAAGGATAACCCAACAAATGCTAATCAAGCTGACAGTCCACTGCTGAGTGCATCTAATCTTGACATTTCAAATAGAAACGTTCACAATTTGATCAACAAGGAATTTTCACCCAGTTGTTTGCCATCCCTTTCTTACTTGAACATTCGTGGAAATCCATTGGAGCAAAATTCAGTTTCTGACTTGTTAGATCTGCTGAGGCAATTCCCTTGCTTACGTTCATTGGAGGTCGATATTCCCGGTCCTCTTGGAGGAAGTGCCATTGAAATTATGGAATCTCTTCCAAACATTTCTGAAATAAATGGTATTTCTGCATCCAAAATATTGGAAATTGGAAAGCATGTTATTGATTCAGTGCTTCTTCCCCGTCTTCCTGAATGGAATCCTGATGAGCCTATCCATGATCGTATTATAAGCGCAATGTGGCCATATCTAATGACATATAGACTTGCCAATGAAGAAAAGTTAGACGAAACCTCTGTATGGTATGTTATGGATGAATTTGGTTCTGCTTTGCGGCACAGTGATGAGCCAAATTTTAGAGTGGCGCCTTTTCTTTTCATGCCGGAGGGTAATCTGGCATCAGCTGTGAGCTTTTCTATTCTATGGCCAACTCGGAATGTTTGTAAAGGCGATGAATGCACCCGTGACTATCTTCTTGGTATTGGGGAAGATAAACAGCGTTCTGCCAGACTTACTGCCTGGTTCCATACCCCAGAGAACTACTTTATCCAAGAGTATGCGAAGCACAATCAGAAATTGCAATCCACAAGTTTAATACCACCCACTGTACAGTCTTCTGAGAGAAGTATTCGTCCACATGAAGGGCGTCCTTTACGGGTTTACACAGATATACCTCACGTGGAGGAGAACTTGACTCATCCTGAGTTTGCAATCATAAAGGACCCAAAAGATGCAGATATAATATGGACATGTGTGCAGGTAGATGAGGAGATGAAAAAGGCCACAGGAATAACAGATCAGCAATACATTAATCAATTTCCATTTGAGGCTTGTCTTGTCATGAAACATCATTTAGCAGAGACAATTCAGAAGGCACATGGATCTCCTCAATGGTTGCAGCCTACTTATAACCTTGAAACTCATCTGTCTCAACTTATTGGTGATTATTATTTACGCAAAAGAGAAGGACTAGACAACCTTTGGATCTTAAAACCCTGGAACATGGCCCGAACTATTGATACCGCAGTAACTGATAATTTGCCAGCCATAATCCGACTCATGGAAACTGGTCCAAAAATATGCCAGAAGTATATTGAACAACCTGCTTTGTTccaagggaaaaagttcgatcTCCGTTACATAGTACTGGTTCGGAGCATGCACCCTTTGGAGATATTCCTGTCAGATTGTTTCTGGGTTAGGATAGCCAACAACCAATATTCTTTGGCCAAAAGTAGTCTCTTTGAGTATGAAACTCATTTCACTGTTATGAATTATCGTGGAAGAATAAACCACAAGAATATCAAGGATTTTGTGAGGGAATTTGAGGAAGAACATCAAGTTAAATGGTTGGATATACACGCAAGAGTAAGGAATATGATTCGATCAGTGTTTGAGGCAGCTGCGGTTGCACATCCTGAGATGCATAATCCAACATCAAGGGCAATGTACGGTGTAGATGTCATGTTAGACGGCTCTTTCCAACCTAAGTTACTAGAGGTGACTTACTGCCCTGATTGTACACGAGCTTGCAAATATGACATGGATATCGTTGTTGGAGAAGGAGGTGTTGCCAAAGGTTGTGATTTCTTCAACAATGTGTTCAAGTGTCTCTTTTTGAATGAAATTTCTCAGGTTAGTCCATTGTAA 2619 0.4074 MVAMATAKRIETFEDFVKVHGILLAASGLPESLHRRLFQKLSTETFDGGEHFQIEPCEDNRMRRLVLTSDSMAKNSNVFLIDHAWTFRLSDAYKQLREVPGLAERMSSLMCVDIDTNLDGENDVNDVDDEASREKLGVVEIVESEVLEAKEKGDGTLRWLELDDLDIDDDMFLSLDLPARFPNLVALSLYGNKLTSAELVVQEVTKFKHLKGLWLNNNPVLKNGDGELADIFLKELPELEIYNSTFTRNFAEWALGFCADIYGKDNPTNANQADSPLLSASNLDISNRNVHNLINKEFSPSCLPSLSYLNIRGNPLEQNSVSDLLDLLRQFPCLRSLEVDIPGPLGGSAIEIMESLPNISEINGISASKILEIGKHVIDSVLLPRLPEWNPDEPIHDRIISAMWPYLMTYRLANEEKLDETSVWYVMDEFGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTRNVCKGDECTRDYLLGIGEDKQRSARLTAWFHTPENYFIQEYAKHNQKLQSTSLIPPTVQSSERSIRPHEGRPLRVYTDIPHVEENLTHPEFAIIKDPKDADIIWTCVQVDEEMKKATGITDQQYINQFPFEACLVMKHHLAETIQKAHGSPQWLQPTYNLETHLSQLIGDYYLRKREGLDNLWILKPWNMARTIDTAVTDNLPAIIRLMETGPKICQKYIEQPALFQGKKFDLRYIVLVRSMHPLEIFLSDCFWVRIANNQYSLAKSSLFEYETHFTVMNYRGRINHKNIKDFVREFEEEHQVKWLDIHARVRNMIRSVFEAAAVAHPEMHNPTSRAMYGVDVMLDGSFQPKLLEVTYCPDCTRACKYDMDIVVGEGGVAKGCDFFNNVFKCLFLNEISQVSPL 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02285 872 Gene3D - 667 846 - -
Tsu08g02285 872 Pfam Tubulin-tyrosine ligase family 590 840 IPR004344 GO:0036211
Tsu08g02285 872 SUPERFAMILY RNI-like 156 363 - -
Tsu08g02285 872 Gene3D Ribonuclease Inhibitor 132 382 IPR032675 -
Tsu08g02285 872 ProSiteProfiles TTL domain profile. 536 864 IPR004344 GO:0036211
Tsu08g02285 872 PANTHER TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 4 871 IPR027749 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02285 K16609 - gmx:100809212 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02285 08 31911251 31919216 Tsu08g02285 08 31911251 31919216 ECH