Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02265 atgaaGATGATTCTAACTATCTCATTCTTCATTGTAtcttttctttccctttctcaTGCATCAGTAGTTGATTTCTGCGTAGCGGATTACAACGGACCAAATGGCCCCGCCGGATATTCTTGCAAATCACCAAAAAAAGTTACCGAGAATGACTTCGTCTATCATGGCCTAGCCACAGCTGGAAACACCTCAAACATTATCAAAGCCGCTGTTACCCCTGCATTCGACGCACAATTTGCCGGAGTAAATGGTCTTGGAATTTCCATTGCGCGTTTAGATTTAGCCGGGGGAGGAGTTATTCCACTTCACACTCACCCCGGTGCTTCGGAAATATTGGTTGTTATTCAAGGAACAATATGTGCCGGTTTTGTTTCGTCTGATAATACGGTTTACATTAAAACACTTTACAAAGGTGATGTTATGGTTTTTCCACAAGGATTGTTGCATTTCCAAATTAATAGTGGTGGTTCTAATGCACTTGCTTTTGTTAGCTTTAGTAGTGCTAATCCTGGTTTGCAGATATTGGATTTCGCTTTGTTTAAAAGCGATTTTCCAACTGAATTGATTACTGCAACTACTTTTATTGATGCTGCTGTAGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTAGTGGTTAA 636 0.3915 MKMILTISFFIVSFLSLSHASVVDFCVADYNGPNGPAGYSCKSPKKVTENDFVYHGLATAGNTSNIIKAAVTPAFDAQFAGVNGLGISIARLDLAGGGVIPLHTHPGASEILVVIQGTICAGFVSSDNTVYIKTLYKGDVMVFPQGLLHFQINSGGSNALAFVSFSSANPGLQILDFALFKSDFPTELITATTFIDAAVVKKLKGVLGGSG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02265 211 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Tsu08g02265 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 207 - -
Tsu08g02265 211 Gene3D Jelly Rolls 19 210 IPR014710 -
Tsu08g02265 211 SUPERFAMILY RmlC-like cupins 22 205 IPR011051 -
Tsu08g02265 211 SMART Cupin_1_3 55 201 IPR006045 -
Tsu08g02265 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Tsu08g02265 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Tsu08g02265 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Tsu08g02265 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 8 207 - -
Tsu08g02265 211 CDD cupin_OxOx 18 207 - -
Tsu08g02265 211 Pfam Cupin 56 199 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02265 Tsu-Chr8 31371193 31372309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02265 1 210 Miscellaneous Gene Families AT5G20630 72.986 3.97e-109 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02265 - - gmx:100806553 335.88