Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02258 ATGGCATCCGTTTACATACCGGTTCAAAATTCAGAGGAAGAAGTTAGGGTTAATCTCGATCAACTTCCTAGGGATGCTTCCGATATCCTTGATATCCTTAAAGCTGAACAAGCTCCTCTCGATCTTTGGCTCATTATCGCGAGGGAGTACTTCAAACAGGGAAAAGTTGATCAGTTTCGCCAGATTTTGGAAGAAGGATCCAGTCCAGAAATTGATGAATATTATGCTGATATTAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGGGCTTACTATAGCTACCTTGGAAAAATAGAGacaaaacaaagagaaaaagaggaGCATTTCATTTTAGCAACACAATATTACAATAAAGCATCACGGATAGACATGCATGAGCCCTCTACTTGGGTTGGAAAAGGTCAGCTTTTGTTAGCAAAGGGTGAAGTTGAACAGGCATCTTCTGCATTTAAGATTGTGTTAGAAGGAGATCGTGACAATGTTCCTGCTCTTTTAGGCCAGGCATGTGTCGAGTTCAACCGTGGAAAATATTCAGATTCGCTTGAGTTGTATAAGAGGGCATTGCAAGTGTATCCCAATTGCCCCGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCGACAGGCATTTGAGCGTGTTTTGCAGCTTGATCCGGAAAATGTTGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGCTCTAACGAAGCTGTTGGAATTAGGAAAGGAATGGTAAAAATGCAGAGGGCATTTGAGATTTACCCGTACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTTTTCACTGGTCAACATTTTTTGGTTGAGCAACTGACTGAAACTGCATTATCTGTTACCAATCATGGTCCAACAAAGTCTCACTCTTATTACAATTTAGCACGTTCTTACCATAGCAAGGGAGACTATGATAAAGCTGGGGTGTATTACATGGCGTCTGTCAAGGAAATTAGCAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTACAAATTAAGTTGGGAGATTTTAGAAGTGCACTCTCAAACTTTGAAAAGGTTTTGGAGGTGTACCCAGATAATTGCGAGACATTGAAAGCGCTTGCTTACATATATGTTCAGCTTGGGCAGACTGACAAAGGCCATGAATTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAACTAGGAGAATTGTTAATTTTGTCCGACACAGGAGCTGCACTGGATGCATTCAAAACTGCCCGTACTCTTTTTAAGAAGGGAGGTCAGGAAGTACCAATTGAATTACTCAACAATATTGGTGTCCTCCAGTTCGAAAGGGGAGAATTTGAGTTTGCTAAACAAACTTTTAAGGAAGCTCTTGGTGATGGAATTTGGCTTTCTTTCTTTAGTGAGGCAAATAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGTAATGGTCAACTTATTGAAGTACCATGGGATAAAGTCACAGTACTCTTTAACCTGGCCAGATTACTTGAGCAGTTAAATGAATCTGGAACTGCAAGCATATTATATCGTCTAATCTTGTTTAAGTATCCAGACTATATTGATGCGTATCTGAGGCTAGCTGCTATTTCAAAGGCTCGGAACAACATTCTATTAAGCATTGAACTGGTTAATGATGCCCTGAAGGTGAATGGCAAGTGTCCAAATGCATTATCTATGCTGGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTGCGGGCAGCCAGTGACGCCACTGACGGGAAGGATTCATATGCTACACTTTCTCTAGGAAACTGGAACTACTTTGCTGCAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAGCTTTATACAAAAGTAATGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGCGCTGCAGTTGTTTTTGCAGAAAAAGGCCATTTTGATGTTTCAAAAGATATCTTTACGCAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGACGTTTGGATCAATCTGGCCCATGTCTATTTTGCTCAGGGGAATTTTGCTTTGGCCGTCAAAATGTATCAGAATTGCTTGCGGAAGTTTTATCATAACACAGACTCACAAGTACTTCTATACTTGGCACGTACCTATTATGAAGCCGAACAGTGGCAAGACTGTATTAAAACTCTACAGAGAGCCATCCATTTGGCACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAGAAGTTTTCAGCATCAACGCTTCAAAAGGCAAAGAGGACTGCAGATGAGGTGAGAGCAACGGTTGCAGGGCTGCAAAATGCTGTCCGTATATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAGATTGATACTCATGTTGGATACTGCACCCACTTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAACAACAAATACGGCAGAGACAGGAAGTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCCCGGCGTAAGGCTGAAGAGCAAAGGAAAATCCAGaTGGATAGGAGAAAGCATGAGGACGAGTTAAAAATAGTGCAAAAACAGGAGGAGCATTTTAAACGTGTTAAGGAACAATGGAAGAGCAGCACACATTCAAAACGGAGGGAAAGgtcagatgatgaagatggtgGGACTgctgagaaaaagaaaagaaaaggtggaAAGAGGAGGAAGAAGGATAAGCACTCGAAGTCACACAATGACACAGAAGAAATGGAGCCTGATATGATGGATGAACAggaaatggaggatgaagatgcTAACACAAACTACAGAGAGGAGCTCGAAACTCATACGAAGGATGTTGAGGAAAATCCCCAGGAAAATCCCCATGGTCTTCTTGCATTAGCAGGACTTGAGGATTCTGATGCAGATGATGAGCCGGCCGGACCTTCCTCAACCATTAGCAGGCGAAGGCAGGCATTATCAGAATCTGATGACGATGAACCGATAATAAAGCAATCAAGTCCTGTAAGAGAAAATTCTGTTGATATGGAGGAGAGTGATGGAGAAATTAGGGGTGGAGAAAAGACACATGGAGATGATGCCAGTGACGaggaaaaataa 3267 0.4065 MASVYIPVQNSEEEVRVNLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVDQFRQILEEGSSPEIDEYYADIRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEGDRDNVPALLGQACVEFNRGKYSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVALAIMDLRSNEAVGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALSVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDFRSALSNFEKVLEVYPDNCETLKALAYIYVQLGQTDKGHEFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFEFAKQTFKEALGDGIWLSFFSEANKSSIDAATSTLQFKDMQLFHDLESNGQLIEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLAAISKARNNILLSIELVNDALKVNGKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTKVMIQHSSNLYAANGAAVVFAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQVLLYLARTYYEAEQWQDCIKTLQRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAGLQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCTHLLSAAKVHLEAAEREEQQIRQRQEVARQVALAEEARRKAEEQRKIQMDRRKHEDELKIVQKQEEHFKRVKEQWKSSTHSKRRERSDDEDGGTAEKKKRKGGKRRKKDKHSKSHNDTEEMEPDMMDEQEMEDEDANTNYREELETHTKDVEENPQENPHGLLALAGLEDSDADDEPAGPSSTISRRRQALSESDDDEPIIKQSSPVRENSVDMEESDGEIRGGEKTHGDDASDEEK 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02258 1088 Coils Coil 801 821 - -
Tsu08g02258 1088 MobiDBLite consensus disorder prediction 972 990 - -
Tsu08g02258 1088 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Tsu08g02258 1088 SMART tpr_5 162 195 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 524 557 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 558 591 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 713 746 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 448 477 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 376 409 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 342 375 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 592 625 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 305 338 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 749 782 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 197 230 IPR019734 GO:0005515
Tsu08g02258 1088 SMART tpr_5 128 161 IPR019734 GO:0005515
Tsu08g02258 1088 MobiDBLite consensus disorder prediction 915 949 - -
Tsu08g02258 1088 Coils Coil 855 902 - -
Tsu08g02258 1088 Pfam Tetratricopeptide repeat 354 412 - -
Tsu08g02258 1088 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1047 IPR031101 GO:0006355|GO:0016570
Tsu08g02258 1088 Pfam Tetratricopeptide repeat 168 228 - -
Tsu08g02258 1088 MobiDBLite consensus disorder prediction 915 1088 - -
Tsu08g02258 1088 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Tsu08g02258 1088 SUPERFAMILY TPR-like 512 793 IPR011990 GO:0005515
Tsu08g02258 1088 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Tsu08g02258 1088 ProSiteProfiles TPR repeat profile. 749 782 IPR019734 GO:0005515
Tsu08g02258 1088 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Tsu08g02258 1088 Gene3D Tetratricopeptide repeat domain 650 835 IPR011990 GO:0005515
Tsu08g02258 1088 Gene3D Tetratricopeptide repeat domain 344 506 IPR011990 GO:0005515
Tsu08g02258 1088 MobiDBLite consensus disorder prediction 991 1007 - -
Tsu08g02258 1088 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Tsu08g02258 1088 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Tsu08g02258 1088 SUPERFAMILY TPR-like 107 296 IPR011990 GO:0005515
Tsu08g02258 1088 Gene3D Tetratricopeptide repeat domain 8 333 IPR011990 GO:0005515
Tsu08g02258 1088 SUPERFAMILY TPR-like 302 475 IPR011990 GO:0005515
Tsu08g02258 1088 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Tsu08g02258 1088 Pfam Tetratricopeptide repeat 718 782 - -
Tsu08g02258 1088 Gene3D Tetratricopeptide repeat domain 508 649 IPR011990 GO:0005515
Tsu08g02258 1088 MobiDBLite consensus disorder prediction 1040 1088 - -
Tsu08g02258 1088 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02258 K15176 - gmx:100794371 1896.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02258 08 31175654 31192127 Tsu08g02258 08 31175654 31192127 ECH