Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02190 ATGGCTGCTGCTAATGGTCCAGCTGTTCTTCTTTTTGGTAGAGTATTTGTCGGTCTAGGTGTTGGTATGGCTTCTATGGCGTCGCCTTTATACATCTCCGAGGCTTCACCAACTAGAGTTAGAGGCGCTCTTGTAAGTCTCAACAGTTTTCTCATCACCGGTGGACAATTCCTATCCTATCTCATCAACTTGGCCTTTACAAAGGCTCCAGGGACTTGGAGGTGGATGTTAGGAGTTGCATCTGTACCGGCTTTGATACAAATTGTACTCATGTTGTCACTCCCTGAATCGCCTCGTTGGTTGTACCGCAAGGGCAAGGAAGACGAAGCAAAACTGATTCTGAAAAAGATATACGAGGTTGAGGACTATGACAACGAAATTCAGCAGTTAAAAGAATCAGTTGAAATGGAACTGAAGAATACAGAAAAAATCAGCATGATGCAGCTTATAAAAACAACATCTGTTAGAAGAGGTTTATATGCTGGTGTAGGACTTGCATTTTTCCAACAATTCGTCGGTATCAACACCGTGATGTACTACAGTCCTACCATTGTTCAGTTGGCAGGTTTTGCGTCAAACAGAACAGCACTTCTTCTGTCATTAATCACTTCTGGCCTTAATGCATTTGGTTCCATATTAAGCATATATTTCATTGATAAGACTGGTAGGAAAAAACTTGCATTGATAAGTTTGACTGGTGTTGTGCTCTCTTTAGCGCTTTTAACCGTTACTTTTCGTGAGACTGAGATTCATTCACCTATGGTTAGTCCCTTTGAAAGCAAGCAATTTAGTAATAACACATGCCCGGAGTTCAATACGGCAACTCTCAATAATCAGAAATGGAATTGTGTGAGGTGTATACAATCTTCGAATAAACCTACTTGTGGTTTTTGTGCCGATCATAACAAGATCCAACCAGGGGCATGTCTtatcaaaaatgatttttcaaaaaaccAGTGTGGCAAGGAAAAGAGGGCATGGTACACACAAGGGTGTCCAAGCAATTTTGGTTGGGTTGCACTTGTTGGTCTTGGACTCTACATCATTTTCTTCTCCCCCGGAATGGGAACCGTTCCATGGGTTGTTAACTCTGAAATCTATCCACTAAGATACAGAGGAGTGTGTGGTGGTATAGCTTCTACAACAGTTTGGGTTTCAAATCTCGTTGTTTCGCAATCTTTTCTATCTTTGACTGAAGTAATTGGACCATCTTGGACATTCATGATCTTTGGAGTTATTGCTATTGTTGCAATTctctttgttattgtttttgtgCCCGAAACTAAAGGTGTTCCGATCGAAGAAGTCGAGGATATGCTGGAAAAGAGATTTGTTCAGATTAAATTTTGGAAGAAGAGAGATTCTTTAGGATCTCAGAAGCATtga 1386 0.3983 MAAANGPAVLLFGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTKAPGTWRWMLGVASVPALIQIVLMLSLPESPRWLYRKGKEDEAKLILKKIYEVEDYDNEIQQLKESVEMELKNTEKISMMQLIKTTSVRRGLYAGVGLAFFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDKTGRKKLALISLTGVVLSLALLTVTFRETEIHSPMVSPFESKQFSNNTCPEFNTATLNNQKWNCVRCIQSSNKPTCGFCADHNKIQPGACLIKNDFSKNQCGKEKRAWYTQGCPSNFGWVALVGLGLYIIFFSPGMGTVPWVVNSEIYPLRYRGVCGGIASTTVWVSNLVVSQSFLSLTEVIGPSWTFMIFGVIAIVAILFVIVFVPETKGVPIEEVEDMLEKRFVQIKFWKKRDSLGSQKH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02190 461 Gene3D MFS general substrate transporter like domains 324 447 IPR036259 -
Tsu08g02190 461 SUPERFAMILY MFS general substrate transporter 1 438 IPR036259 -
Tsu08g02190 461 PRINTS Sugar transporter signature 11 30 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02190 461 PRINTS Sugar transporter signature 364 376 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02190 461 PRINTS Sugar transporter signature 341 362 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02190 461 PRINTS Sugar transporter signature 169 179 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02190 461 Gene3D MFS general substrate transporter like domains 1 258 IPR036259 -
Tsu08g02190 461 Coils Coil 120 140 - -
Tsu08g02190 461 Pfam Sugar (and other) transporter 3 245 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu08g02190 461 Pfam Sugar (and other) transporter 336 439 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu08g02190 461 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 460 - -
Tsu08g02190 461 ProSitePatterns Sugar transport proteins signature 2. 16 41 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu08g02190 461 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 429 IPR020846 GO:0022857
Tsu08g02190 461 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02190 Tsu-Chr8 29740461 29743014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02190 1 461 Organic Solute Cotransporters AT1G30220 66.022 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02190 K08150 - gmx:100785028 712.605