Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02145 ATGGCCTCCTCTTTGGCACACCCACCACCACATCTTCCCTCTCTAAATCCCAAACCCAACTTCACTCGCCGCTCACTCCTCCTCACATCAACCGCCACCACTCTCTCCTTCCCTTCTCTCTCCTCCTCCGCTTCACCACCACCAATCCCCACCATTACCGACCGCATCTTCATGGAATTCAGCCTCTGCCCAAACTATTACCTCCCAAATCGAACCCTAGGTGACACCATTTCCACCTTATGCTCCGATTCAACTCTACTCGGTCGTGTCATTCTCGGTCTCTACGGTAATCTCGTTCCCCGCACCGTCTCAAATTTCAAATCCCTCTGCATTTCCGCTTCCAATTCTAACCCTAATTCCTCTTCCTACAAGAACACACTCGTCCACAAGGTTTTACCAGGTCAATACTTTCTTGCTGGACGTCAGGGTCGTCCTGACAGAGGCGAGGTCCGCCCTCCAAGTTACCTCCCTCGCAACATTGAAACAGTGGATCCCAAGGCGTTCACGCTTACACATTCCCGACCTGGCATTGTTTCGCTATCGCTGtctgaaaatgatgatgaagacgAGATCAAGTTTGACCCCGAATACAGGAATGTTGAGTTCTTAATTACCACTGGACCTGGACCTTGTCCTCAACTTGATAACAAGAATATCGTCTTTGGAACCGTGCTTGAAGGGTTGGATGTCATCAGAGCCATAGCTTCCACTCCCACATACCAACCAGGTGAACGAATTCGCCAATTTAATGACTTGGCTGAATTTTTCGGAGACGAAAGGGCCCAGAATGCTCGTGCCATATGGAACAGGCCTCTTACCACGATTTATATTAGTGACTGTGGGGCGCTAGAGGTTACAAAGCCTTCCCTCACACCTTCTCtcccttaa 888 0.4842 MASSLAHPPPHLPSLNPKPNFTRRSLLLTSTATTLSFPSLSSSASPPPIPTITDRIFMEFSLCPNYYLPNRTLGDTISTLCSDSTLLGRVILGLYGNLVPRTVSNFKSLCISASNSNPNSSSYKNTLVHKVLPGQYFLAGRQGRPDRGEVRPPSYLPRNIETVDPKAFTLTHSRPGIVSLSLSENDDEDEIKFDPEYRNVEFLITTGPGPCPQLDNKNIVFGTVLEGLDVIRAIASTPTYQPGERIRQFNDLAEFFGDERAQNARAIWNRPLTTIYISDCGALEVTKPSLTPSLP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02145 295 CDD cyclophilin 88 247 - -
Tsu08g02145 295 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP28, CHLOROPLASTIC 14 295 IPR044178 -
Tsu08g02145 295 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 87 241 IPR002130 GO:0000413|GO:0003755
Tsu08g02145 295 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 282 IPR002130 GO:0000413|GO:0003755
Tsu08g02145 295 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g02145 295 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Tsu08g02145 295 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 140 IPR002130 GO:0000413|GO:0003755
Tsu08g02145 295 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 231 IPR002130 GO:0000413|GO:0003755
Tsu08g02145 295 SUPERFAMILY Cyclophilin-like 77 283 IPR029000 -
Tsu08g02145 295 Gene3D - 76 255 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02145 Tsu-Chr8 29057265 29060380 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02145 K03768 - gmx:100816868 417.927