Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02142 ATGGCAGGTGGATCTTCAACGACAAGTGTTGTGGCCAAAGAAAGGGCAGAGCTTTACAAAGGAAGAGTCACTCCTTATGTTATTGTTGCATGCATTGTTGCTGCTACAGGAGGGTCACTATTTGGCTATGATATTGGAATTTCCgGTGGGGTGACTTCCATGGATGACTTCCTTGAAGAATTCTTCCCTGTAGTATACAGACAAAAAAAGCATGCACATGAAAACAATTACTGCAAGTACGATAATCAGGGCCTTGCCGCATTTACCTCTTCTCTATACATTGCTGGTTTAGTTGCATGCTTGATTGCATCTCCAATTACAAGGAAGTATGGACGTCGGGCAAGTATCATAGGTGGTGGTATCAGCTTTCTCATTGGATCAGCCCTGAATGCTTCAGCAGTTAACCTAGAAATGTTGATCTTGGGTCGTGTTATGCTTGGCATTGGCATCGGATTTGGAAATCAGGCAATTCCGCTTTATTTGTCAGAGATGGCACCGACACACCTGAGAGGAGGAATGAACATGATGTTTCAAGTGGCAACAACTTTTGGAATTTTCACAGCCAATATGGTGAATTATGGAACACAGAAGATTAAACCTTGGGGATGGAGGTTGTCCCTAGGATTGGCTGCAATACCGGCTCTTTTGATGACGATAGGAGGTATATTTCTACCAGAGACTCCAAATAGCTTAATAGAACGAGGATCAAATGAAAGAGGACGGAAGCTCCTAGAAAAAATCCGAGGAACTAGCGAGGTTGACGCGGAGTTTCAAGATATGGTTGAAGCAAGCGAGTTGGCAAACTCAATAAAGCACCCGTTTCGTAACATCCTTGAAAGAAGGTATAGGCCAGAATTGGTGATGGCAATTGTCATGCCAACTTCACAGATATTGACTGGCATAAATTCCATTCTCTTCTATGCTCCAGTATTGTTTCAAAGCATGGGATTCGGAGGCGATGCATCCCTCTATTCCTCAGCTTTGACGGGAGGTGTTCTTGCTTGCTCAACATTCATTTCCATTGCAACAGTTGATAAGTTGGGAAGAAGAGTTCTTCTTATCAGTGGTGGAATACAAATGATCACATGCCAGATTATAGTTGCAATAATTCTTGGAGTCAAGTTTGGGGACAACCAGGAACTATCGAAAAGCTATTCGATATTGGTTGTAGTTGTGGTTTGCCTATTTGTTGTAGCATTTGGATGGTCGTGGGGGCCGCTAGGGTGGACGGTCCCAAGTGAGATATTTCCATTGGAAATCCGATCAGCAGGGCAGAGTATCACAGTTGCTGTAAACCTTTTGTTCACTTTCATAATTGCCCAGGCATTCCTTGCTCTTCTCTGCTCATTCAAGTTTGGAATCTTTCTATTTTTTGCTGGCTGGATTTCCCTCATGACCATATTTGTTTTTCTGTTCTTGCCTGAAACCAAAGGTATTCCAATTGAAGAGATGACATTTATGTGGAAGAAGCACTGGTTCTGGAAATTGATACTACCTGAAAACACATTGTAA 1512 0.4259 MAGGSSTTSVVAKERAELYKGRVTPYVIVACIVAATGGSLFGYDIGISGGVTSMDDFLEEFFPVVYRQKKHAHENNYCKYDNQGLAAFTSSLYIAGLVACLIASPITRKYGRRASIIGGGISFLIGSALNASAVNLEMLILGRVMLGIGIGFGNQAIPLYLSEMAPTHLRGGMNMMFQVATTFGIFTANMVNYGTQKIKPWGWRLSLGLAAIPALLMTIGGIFLPETPNSLIERGSNERGRKLLEKIRGTSEVDAEFQDMVEASELANSIKHPFRNILERRYRPELVMAIVMPTSQILTGINSILFYAPVLFQSMGFGGDASLYSSALTGGVLACSTFISIATVDKLGRRVLLISGGIQMITCQIIVAIILGVKFGDNQELSKSYSILVVVVVCLFVVAFGWSWGPLGWTVPSEIFPLEIRSAGQSITVAVNLLFTFIIAQAFLALLCSFKFGIFLFFAGWISLMTIFVFLFLPETKGIPIEEMTFMWKKHWFWKLILPENTL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02142 503 CDD MFS_STP 33 475 IPR044778 GO:0015145|GO:0015749
Tsu08g02142 503 ProSitePatterns Sugar transport proteins signature 1. 340 357 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu08g02142 503 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02142 503 SUPERFAMILY MFS general substrate transporter 18 483 IPR036259 -
Tsu08g02142 503 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 4 499 IPR045262 GO:0015144
Tsu08g02142 503 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 477 IPR020846 GO:0022857
Tsu08g02142 503 ProSitePatterns Sugar transport proteins signature 2. 145 170 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tsu08g02142 503 Pfam Sugar (and other) transporter 31 488 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tsu08g02142 503 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02142 503 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02142 503 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02142 503 PRINTS Sugar transporter signature 140 159 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02142 503 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tsu08g02142 503 PANTHER - 4 499 - -
Tsu08g02142 503 Gene3D MFS general substrate transporter like domains 19 491 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02142 Tsu-Chr8 28989584 28993097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02142 1 502 Organic Solute Cotransporters AT4G02050 80.080 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02142 K24193 - gmx:100820434 885.56