Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01921 ATGAGTAAGCAGAATAAGAAGTTTCAGATAGAGGCGTTTAAGCATAAGGTGGTGATGGATCCGAAATATCCTGATAAGACATGGAAGATTCTTGAAGATGCGATTCATGAGATTTATAATCATAACGCTAGTGGTCTCAGTTTTGAAGAACTTTACAGAAATGCTTACAATATGGTGCTTCATAAGTTTGGTGAGAGGCTGTACTCAGGATTAGTTGCAACCATGAGTGTACATCTCAAAGATATAGCTCAATCTATTGAAGCTGCTCAAGGAGGATCTTTTCTGGAAGAACTGAACAGGAAATGGAATGATCATAACAAGGCATTACAAATGATTAGAGATATACTGATGTACATGGATAGGACCTACGTTCCAAGCGCCCGCAAGACTCCAGTTCATGAACTCGGGCTGAACCTGTGGAGAGAAAATGTCATTTATTCCAGCCAGATCAGGACTCGGCTACTGAACACACTTCTGGAATTAATACATAGTGAACGCACTGGTGAAGTTATTGATAGAGGGATTATgagaaatataacaaaaatgcTAATGGATTTAGGTCCTTCTGTTTATGAACATGAATTTGAGAAGCATTTTACTAATGTTTCAGCTGAGTTTTATCAGGTTGAATCCCAGAGATTCATTGAGTGTTGTGATTGTGGTGATTATCTTAAAAAAGCTGAGAGGCGTCTGAATGAGGAAATGGATAGAGTTAGCCATTACTTGGATCCCGGGACTGAAAAGAAGATTAATAAAGTGGTGGAGGAGCAGATGATTGAAAATCACATGCTTAGGTTAATCCATATGGAGAATTCTGGATTAGTCAACATGCTTTGTGATGATAAATATGAAGATTTGGGTAGGATGTATACCTTGTTCCGACGTGTTACTGATGGTCTTTTGAAAATTCGAGAAGTGATGACTTCACACATAAGGGAGTCTGGTAAACAGCTTGTTACTGATCCTGAAAGGTTAAAGGATCCAGTCGAATTTGTGCAGAGGCTCTTAGATGAGAAAGACAAATACGACAAGATTATAAACCTACCATTCAACAACGACAAGTCTTTCCAAAATGCTTTGAATTCCTCGTTTGAATATTTCATTAACTTGAACCCCCGTTCTCCAGAGTTCATTTCACTGTTTGTAGATGATAAACTTCGTAAGGGTCTGAAAGGGGTTAATGAGGATGATGTAGAGGTCACTCTTGACAAGGTGATGATGCTATTCCGATACTTGCAAGAAAAAGATGTTTTTGAAAAGTATTACAAACAGCATCTGGCAAAGAGGCTTTTGTCTGGAAAAACGGTTTCTGATGATGCCGAGAGAAGTCTCATTGTTAAGCTCAAGACTGAATGTGGTTATCAATTTACTTCTAAATTAGAGGGAATGTTTACAGACATGAAAACCTCTCAGGACACAATGCAGGGCTTTTATGCCAGCCACCCTGACTTAGGTGACGGTCCTACGCTTACTGTCCAGGTTCTTACTACAGGGTCTTGGCCAACTCAGTCTAGTATTACGTGCAACCTTCCAGCTGAAATATCTGCACTTTGTGAGAAGTTTCGGTCATATTACCTTGGCACACATACCGGCAGAAGATTGTCGTGGCAAACTAACATGGGCTTTGCAGATTTAAAAGCAACCTTTGGGAAGGGTCAGAAGCACGAGTTAAATGTCTCTACCTACCAAATGTGTGTCCTAATGCTTTTTAATAATGCTGATAAGCTTAGCTACAAGGAGATAGAGCAAGCAACTGAGATCCCTGCTGCAGATCTTAAGAGATGTCTGCAATCATTGGCTTTAGTTAAGGGAAGAAATGTCCTTAGAAAGGAGCCAATGAGTAAAGATGTTGTTGAGGATGATGCTTTCTTTGTTAATGACAAGTTCAGTAGTAAACTATACAAGGTCAAAATAGGAACTGTAGTTGCACAAAAGGAATCCGAACCTGAGAAACAGGAAACTCGGCAGCGAGTGGAAGAGGACAGAAAGCCACAGATTGAAGCGGCGATAGTGAGGATCATGAAATCTAGGAAGCAACTTGATCATAACAATCTTATAGCTGAAGTCACAAAGCAGTTGCAGTCACGTTTCCTTGCGAATCCAACAGAGGTCAAGAAACGGATTGAGTCTCTCATTGAGCGAGACTTTTTGGAGAGGGATGATAACGACAGAAAGTTGTACCGATATCTTGCTTAG 2196 0.398 MSKQNKKFQIEAFKHKVVMDPKYPDKTWKILEDAIHEIYNHNASGLSFEELYRNAYNMVLHKFGERLYSGLVATMSVHLKDIAQSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYVPSARKTPVHELGLNLWRENVIYSSQIRTRLLNTLLELIHSERTGEVIDRGIMRNITKMLMDLGPSVYEHEFEKHFTNVSAEFYQVESQRFIECCDCGDYLKKAERRLNEEMDRVSHYLDPGTEKKINKVVEEQMIENHMLRLIHMENSGLVNMLCDDKYEDLGRMYTLFRRVTDGLLKIREVMTSHIRESGKQLVTDPERLKDPVEFVQRLLDEKDKYDKIINLPFNNDKSFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVNEDDVEVTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASHPDLGDGPTLTVQVLTTGSWPTQSSITCNLPAEISALCEKFRSYYLGTHTGRRLSWQTNMGFADLKATFGKGQKHELNVSTYQMCVLMLFNNADKLSYKEIEQATEIPAADLKRCLQSLALVKGRNVLRKEPMSKDVVEDDAFFVNDKFSSKLYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIERDFLERDDNDRKLYRYLA 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01921 731 Gene3D Cullin Repeats 144 263 - -
Tsu08g01921 731 Gene3D Cullin; Chain C, Domain 2 488 642 - -
Tsu08g01921 731 Gene3D - 643 731 IPR036388 -
Tsu08g01921 731 Pfam Cullin family 28 629 IPR001373 GO:0006511|GO:0031625
Tsu08g01921 731 Gene3D Cullin Repeats 13 142 - -
Tsu08g01921 731 SUPERFAMILY Cullin repeat-like 21 371 IPR016159 -
Tsu08g01921 731 Pfam Cullin protein neddylation domain 661 723 IPR019559 -
Tsu08g01921 731 Gene3D Cullin Repeats 264 371 - -
Tsu08g01921 731 SUPERFAMILY Cullin homology domain 367 639 IPR036317 -
Tsu08g01921 731 SMART cul_2 403 549 IPR016158 -
Tsu08g01921 731 SMART Cullin_Nedd8_2 658 725 IPR019559 -
Tsu08g01921 731 PANTHER CULLIN-3A-RELATED 3 731 - -
Tsu08g01921 731 Gene3D Cullin Repeats 372 483 - -
Tsu08g01921 731 PANTHER CULLIN 3 731 IPR045093 -
Tsu08g01921 731 SUPERFAMILY "Winged helix" DNA-binding domain 642 731 IPR036390 -
Tsu08g01921 731 ProSiteProfiles Cullin family profile. 373 600 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01921 Tsu-Chr8 24410633 24417874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01921 K03869 - gmx:100795098 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01921 08 24410633 24417874 Tsu08g01921 08 24410633 24417874 ECH