Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01854 ATGAGCATCTCCACCACTGTTTTTTCTGAGCCACTCTTTAACTTCAAACGTTGTCACTACCACAGATTAGCTACCATTTCCCGTTCCAAGCTAAATCAACACActttctcttcctcttcctTATTCTCCAATAATAAATATGATTCTTGTTCTTGGACATTGAAGCCACCCCATAAGTTTCTTTCTCCAAAGTTTGAAACTTTTGCAACAAATACAGATACCCTTGAGTCGATTCAGTCTTCTGATGTCATTTTCAATCAGACTCATCCTATCAACAGAATTGAACTGGTAGAGGGAAAGATCTTTGTAAGATTAGATCAAGGAAATGATTTGAAGATTTCAGAGCTTATAATTGGTTGCAATCTACCAGGAAAATGGGTTCTTCATTGGGGAGTTTCCCGTGTGGATGATATTGGAAGTGAATGGGATCAACCTCCCCATGATATGATACCTGCTGGATCTATTCCTATAAAGGACTATGCTATAGAGACACCTTTGAagaaatcatcatcttcatctgaAGGAGATACTTTTCATGAAGTCCGGATTGGCCTTAAACCTAGCGATGAGATATCAGCTATTAATTTTGTTCTCAAGGACGAGGAAACTGGTGCTTGGTATCAACACAAAGGAAGAGACTTCAAAGTTCCTCTTGTCAACTATCTTAAGGAGGATGCTAATTTACTTGGACCTAAATCAGGCTTAAGTTTGTCGCAAGCGGACATAGGGGGGCAGATATCTAATGTTATCCTGAAGTCGGAATCAACTGTTGACAAAGTTCAAGCTAACAGCAGTGAGTCCGAAAATCCAAAAACGGAAAATAGTCTAGTAGAAGGTTTCAATGTAGAACTGTCTTTAACCAAGGAAGTTACTGTCAATAACTCTATCAGTGTCTCCATCAGGAAAGACTCCGAAACAGCTAAATATCTTTTAGATTTAGAAACAGATATACCGGGCgatattttccttcattggggaGCTTGTAGAGATGATTTAAAAATTTGGGAAGCTCCACCTGCTCCTCATCCACCACAAACTGTATCATTTAAAAAGACAGCTTTGAGAACTCAATTAAAGTCAAGAGGCAGTGGAGAGGGAAGTTCGGTACAAGTCTTTCTAGGAGAAGAATATTCAGGATTTCTTTTTGttcttaagataaataaaaatacgtGGTTAAATAACAATGGAAATGATTTTTACGTCCCTCTTTCAACTCCCGATAGCTTAATTATTGGCAACATAGAGGATCAAACGAAAGGTGTAAAGAGTGAAGTGACTGAAGAGACAAGCGAAGAGGAATCTAACTCTGCATTTACCAATGAAATAATCAACGAAATAAGGAGTTTGGTTACAGGCATTTCATCTGTGAAGAGAAGAAAAACGAAATCTAAAGAAGCACAAGAAACCATTCTTCAAGAAATTGAGAGACTTGCTGCTGAAGCCTACAGTATTTTCAGAACTTCTGTTCCAACTTTCTCAGAGGAAGTTATTGTGGAATCCGAGGTTGCTTTGGAATCCGAATCACCTGAGTTGCCACCAAAAATATGCTCAGGAACTGGCACAGGGTATGAAATAGTATGTCAAGGGTTTAATTGGGAATCTAATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCAGAAGAACTATCATCTCTTGGCTTCACTGTGATTTGGTTACCGCCACCTACAGATTCTGTTTCACCGGAAGGATACATGCCAAGGgatttatatgatttaaattctAGATATGGTACCATTGATGAACTGAAGGATGTGGTGAAAACATTTCATAAATTTGGAATCAAAGTGCTAGGAGATGCTGTTTTAAATCACCGCTGTGCCCAACATAAAAATCAGAATGGTGTTTGGAACATATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAGTTGTAGCCGATGATCCACATTTTCAGGGGAGGGGTAACAAGAGTAGTGGAGATAATTTCCATGCGGCTCCAAACATTGATCATTCACAGGACTTTGTGAGAAAGGATATTAAAGAATGGTTATGCTGGTTAAGGGATGAAATTGGATATGATGGGTGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATGGATGCAACCAAACCTTACTTCTCCGTGGGAGAGTACTGGGATTCCCTCAGTTATACGTATGGTGAAATGGATCATAATCAAGATGCACACAGGCAGAGGATTGTCGACTGGATTAGTGCTGCCGGTGGTAGTGCTGGTGCATTTGATGTTACAACCAAAGGAATTCTTCACTCTGCATTGGAAAGATGTGAATATTGGCGCTTGTCAGATCAGCAGGGAAAACCCCCCGGCGTTCTTGGATGGTGGCCGTCTCGTGCTGTTACTTTTATAGAAAACCATGACACTGGTTCTACTCAGGGTCACTGGAGATTTCCCCGCGATAAAGAAATGCAAGGATATGCTTACACTCTTACTCACCCAGGAACTCCGTCAGTGTTCTTTGACCACATTTTCTCTCACTATAAAAAGGAAATATCAGCACTTCTCTCTATTAGGAAACGGAACGGGATCAACTGCAGAAGCAAAGTTGAAATTCACAAGTCCGAAAGGGATGTTTATGCCGCTATCATAGATGGAAAAGTTGCTATGAAGATCGGTCCCGGTCATTTTGAACCACCTAGTGGTTCACAAAACTGGTCAACAGCCTGGGAAGGAAGAGACTATAAGATTTGGGAGGATGCAtcataa 2751 0.3919 MSISTTVFSEPLFNFKRCHYHRLATISRSKLNQHTFSSSSLFSNNKYDSCSWTLKPPHKFLSPKFETFATNTDTLESIQSSDVIFNQTHPINRIELVEGKIFVRLDQGNDLKISELIIGCNLPGKWVLHWGVSRVDDIGSEWDQPPHDMIPAGSIPIKDYAIETPLKKSSSSSEGDTFHEVRIGLKPSDEISAINFVLKDEETGAWYQHKGRDFKVPLVNYLKEDANLLGPKSGLSLSQADIGGQISNVILKSESTVDKVQANSSESENPKTENSLVEGFNVELSLTKEVTVNNSISVSIRKDSETAKYLLDLETDIPGDIFLHWGACRDDLKIWEAPPAPHPPQTVSFKKTALRTQLKSRGSGEGSSVQVFLGEEYSGFLFVLKINKNTWLNNNGNDFYVPLSTPDSLIIGNIEDQTKGVKSEVTEETSEEESNSAFTNEIINEIRSLVTGISSVKRRKTKSKEAQETILQEIERLAAEAYSIFRTSVPTFSEEVIVESEVALESESPELPPKICSGTGTGYEIVCQGFNWESNKSGRWYMELKEKAEELSSLGFTVIWLPPPTDSVSPEGYMPRDLYDLNSRYGTIDELKDVVKTFHKFGIKVLGDAVLNHRCAQHKNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRDEIGYDGWRLDFVRGFWGGYVKDYMDATKPYFSVGEYWDSLSYTYGEMDHNQDAHRQRIVDWISAAGGSAGAFDVTTKGILHSALERCEYWRLSDQQGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPRDKEMQGYAYTLTHPGTPSVFFDHIFSHYKKEISALLSIRKRNGINCRSKVEIHKSERDVYAAIIDGKVAMKIGPGHFEPPSGSQNWSTAWEGRDYKIWEDAS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01854 916 Gene3D - 858 914 IPR013780 -
Tsu08g01854 916 SUPERFAMILY Glycosyl hydrolase domain 858 913 - -
Tsu08g01854 916 SMART aamy 524 853 IPR006047 GO:0005975
Tsu08g01854 916 SUPERFAMILY (Trans)glycosidases 521 841 IPR017853 -
Tsu08g01854 916 PANTHER ALPHA-AMYLASE 86 913 - -
Tsu08g01854 916 Pfam Alpha-amylase C-terminal beta-sheet domain 855 913 IPR012850 GO:0004556|GO:0005509|GO:0005975
Tsu08g01854 916 SMART alpha-amyl_c2 854 914 IPR012850 GO:0004556|GO:0005509|GO:0005975
Tsu08g01854 916 CDD AmyAc_arch_bac_plant_AmyA 525 864 - -
Tsu08g01854 916 Gene3D Glycosidases 524 857 - -
Tsu08g01854 916 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 86 913 - -
Tsu08g01854 916 Pfam Alpha amylase, catalytic domain 549 805 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01854 Tsu-Chr8 22743956 22753373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01854 69 913 Glycoside Hydrolase AT1G69830 66.942 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01854 K01176 - gmx:100788193 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01854 08 22743956 22753373 Tsu08g01854 08 22743956 22753373 ECH