Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01834 ATGGAATTTGAACAACAACAAGTGACCAGGTGGATTGGCTATGTGGACTGGAGGAAAAGACCTGCCCTCAGAGGAAAGCATGGTGGCATGCTTGCTGCTTCCTTTGTTTTGGtggtGGAGGTATTGGAGAATCTTGCATTTTTAGCAAATGCAAGCAACTTGGTGTTATATCTGAAAAATATGCACTTTTCACCATCAAAATCTGCAAACAATGTAACAAATTTCATGGGAACAGCTTTTCTTCTTGCTTTGCTTGGTGGTTTTTTATCTGATGCATTTTTCACAACTTATCACATCTACCTGATAAGTGCAGCAATTGAATTCCTGGGACTAATTGTACTCACAATACAAGCAAGTGTGTCTTCACTTCAACCACCACAATGTGATCCAACAACTTCATGTGAAGAAGTTAATGGTGCAAAAGCATTAATGTTATTTGGTGGATTATATCTAGTTGCTCTTGGAACTGGAGGAATTAAGGGATCATTGGCACCACATGGTGCTGAACAATTTGATGAAGACAGTGTATCTGGAAGGAAACATAGATCAACATTCTTCAACTACTACATCTTTTGTTTATCATTTGGTGCTCTTATTGCTGTTACTTTTGTTGTGTGGATTGAAGATAATGTTGGATGGAAATGGGGTTTTGGAATTTCAACTATTAGTATATTTCTTTCTATCCCTGTTTTCTTGGCTGGTTCTACTAAGTATAGGAACAAGATACCTACTGGGAGTCCTCTTACAACCATTTTAAAGGTTTTGGTAGCAGCAGCAATGAACAACTGCATCTACAAAAACTCCAGCAGTGCTGTTGTGAACTTGACATCAAGCCCATCACATCAAAACTCAGTTAGAAAACAAGAAAACGAAGAATCATCATCCAAACAAATCAAGGAAATACAAACTCCAACAAACACACTAAGATTCCTCAACAGCGCAATCGAAAACGAAACAATAAAATGTACCGTCCAAGAACTCGAAGATGTAAAAATAGTCTTAAAAATCCTCCCAATATTCGGCTGCACAATTGTCCTAAACTGTTGCCTAGCTCAACTATCAACATTCTCAGTTGAACAAGCCGCGACAATGAACACAAAACTCGGTTCATTAAAAGTACCACCAGCTTCATTACCAATTTTCCCAGTAGTCTTCATAATGATCCTAGCACCAATTTATGACCATATTATAATACCCTTTGCAAGAAAATACACAAAATCAGAAATGGGAATAACTCATCTTCAAAGAATTGGAATTGGACTAGTCCTATCGATAATTGCGATGGCAGTGGCAGCAATTGTTGAAGTGAAAAGAAAAAGGGTAGCAACAGATTCAAATCTTTTAGATGATGCAACAAAACCAATTCCAATAACATTCTTATGGATTGCTTTTCAGTATTTGTTTCTTGGTTCAGCTGATCTTTTCACTATGGCTGGTTTATTGGAATTTTTCTTCACAGAAGCACCAATTAAAATGAGATCTTGGGCTACATCACTTACTTGGGCTTCTTTGGCATTAGGATATTACTTAAGTTCAGTGATTATATCAATAGTTAATAGTGTTACTGGTAATTCCTCTCATAAACCTTGGTTATCTGGTTCTAACCTTAACCATTATCATTTAGAGAGGTTTTATTGGCTTATGTGTGTACTTACTGGGTTGAATTTTCTGCATTACTTGTTTTGGGCTATTAGATACAAGTATAGAGGAACTGCTTTGATTGCTAGAGACAGTGTGAATGCTATCGACATGAAAGCATCTTTGTGGCACCGAAGGCTTAGTCATATTAGTGAAAAGGGGCTGAATGTTTTAGCCAAAAAGGATGTGCTTCCAGGATTAAAGAATGCAGATTTGGAGAAGTGTTCACATTGCATGACTGGTAAACAGACTAGAGTATCCTTCAAGAAGCATCCTCCCTCAAGAAAGTTAGAGTTGCTTCAATTGGTGCATTCTGATGTTTGTGGTCCATTAAAGGTAAAATCTTTTAGTGGTGcactttattttgttacttttattgatgactGTTCCAAGAAACTATGGGTATATGCTATAAAGACAAAAGACCAAGTGTTGGAGAAATTCAAAGAATTCCATGCTTTGGTTGAGAGGCAATCAGGTAAGAAGCTGAAATGTGTTCGTTCTGATAATGGTGGTGAGTATTGTGGTCCCTTTGATGTCTATTGCAAGCAGCAGGGTATTGCACATGAAAAGACTCCTCCTAAAACTCCTCAGTTGAATGGTTTAGCAGAGAGGACGAATCGAACACTTGTTGAGAGAGTTAGATGTATGCTCTCAGAAGCTAAGTTGCCTCAACATTATTGGGGTGAAGCACTGTACGCGGCGGTGCATGTTATTAATCTCACTCCTACTGTTGTTTTGAACAGTGAAGTTTCAGACAAAATTTGGTTTGGTAAGAATGTCAAGTATGATCATTTGAGAGTCTTTGGTTGTAAGGCTTTTGTGCATGTTCCAAAGGATGAAAGATCCAAGTTGGATGCAAAGTCAAAACAATGTATCTTCATCGGCTATGGGCAGAATGAGTTTGGTTATAAGTTTTATGATCCTATAGGGAATAAACTTATCAGAAGCCGCGATGTTGTGTTCATGGAAGACCAAACTATTGAAGACATTGATAAGGTGGAGAAGACTACACCAAAGAAAGATGTTAGTTTGTTTAATATTGATCCAGTTCGGTTGCCTTTTCATAATCTGGATACTATTGGTGGTGATGTTCAGAATGGTGAGCCACATGAGTATGTTGATGATCAACAACTTGGAGAAGAGGTATATATTCCAGCTGATAATGATGAGGCGAATGATATGTCACAGGATGAGAATCTTGGTGAAGCTCCAGAATCATCTCAAGTTCAACTTAGGAGGTCCAACAGACAGAGACAACCTTCTACAAGGTATAATTCTGATGAGTATGTGACTTTGACTGATGAGGGTGAACCTGAGTATTTTCAAGAAGCCATGGAAAGTGATGAAAATCAAAAGTGGTTGGATGCAATGAATGATGAGATGAAATCCCTGCATGATAATCACACTTATGATTTAGTGAAGTTGCCTAAAGGCAAAAGGGCTTTGGAAAATAGGTGGATATATAGAGTCAAACATGAGAGTAACTCTGAGTCTCCAAGGTATAAGGCCAGATTGGTGGTGAAAGGTTTCCGTCAAAGAAAGGGTGTTGATTTTAATGAGACTTTCTCACCTGTTGTGAAGATGTCGTCAATTAGAACCGTGTTGGGTTTGGCTGCTACTCTTGATCTAGAGGTTGagcaaatggatgtgaaaacgGCTTTCCTtcatggtgatttggaggaagaGATCTACATGAAGCAACCCGGTGGTTTTCAAGTCAAAGGCAAAGAAGACTATGTGTGTAGATTGAGAAAGAGcctatatgggttgaaacaagctccaaggCAGTGGTACAAGAAGTTTGAGTCTGTTATGTCTGAACAAGGATACAAGAAGACTACTTCAGATCATTGCGtctttgttagaaaattttctaacgATGACTTCATTATCCTGttgttatatgttgatgatatgcttATTGTAGGGAAAAATATTTCTAACATTGGCATGTTAAAGAAGCAGTTGGGCGAGTCATTTGCCATGAAAGACATGGGAGCAGCTAAACAGATTCTTGGCATAAGAATCATGCGTGAcagaaaggagaagaaactttggatgtCACAAGAATACTATATCAAAAGAGTGTTGCAGAGATTCCAGATGGAAAATTCTAAGGCGGTAAGCACTCCTCTTGCTACTCATTTCAAGTTAAGTTCGAAACAAAGTCCTTCAAATGAAGATGAAACATTTGATATGAAACATGTTCCTTATGTGTCTGTTGTGGGTAGTTTGATGTATGCAATGGTGTGTACAAGACCAGATATAGCACATGTTGTTGGTACAGTCAGTAGATTTTTGTCAAATCCAGGTAGAGAGCATTGGAATGCTGTAAAATGGGTTTTAAGGTATCTTCGTGGTACTACTTGTATGAGACTTTGCTTTGGGGGAGATAAGCCTACTTTGGAAGGGTACTCTGACTCAGATATGGCTGGAAACATTGATTCTAGGAAGTCTACTTCGAGCTACATGATTAAGTTTGCAGGGGGAGCTGTGGCTTGGCAGTCCAGATTGCAAAAGTGTGTAGCATTGTCTACTACAGAGGCAGAGTTCATTGCCATTACCGAAGCATGCAAAGAGTTGCTATGGTTGAAGAAATTCTTGCAGGAGCTTGGTTTTGTTCaagacaaatatgtgttatttgttgataGCCAAAGTGATATTCATCTTGGTAAGAATCCGATTTTTCATAATAGGTCCAAACATATTGATGTGAGGTATCATTGGATACGTGATGTTTTGGATGCTAAGTTGTTGGAACTAGCTAAGGTTCATACAGATGATAATGGTTCAGATATGATGACCAAGGCGTTACCAAGGGGAAAATTTGAAGCATGTTGTGATATCGCCAGTTTGGCGATTTCCTCCACATAG 4515 0.3697 MEFEQQQVTRWIGYVDWRKRPALRGKHGGMLAASFVLVVEVLENLAFLANASNLVLYLKNMHFSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTTYHIYLISAAIEFLGLIVLTIQASVSSLQPPQCDPTTSCEEVNGAKALMLFGGLYLVALGTGGIKGSLAPHGAEQFDEDSVSGRKHRSTFFNYYIFCLSFGALIAVTFVVWIEDNVGWKWGFGISTISIFLSIPVFLAGSTKYRNKIPTGSPLTTILKVLVAAAMNNCIYKNSSSAVVNLTSSPSHQNSVRKQENEESSSKQIKEIQTPTNTLRFLNSAIENETIKCTVQELEDVKIVLKILPIFGCTIVLNCCLAQLSTFSVEQAATMNTKLGSLKVPPASLPIFPVVFIMILAPIYDHIIIPFARKYTKSEMGITHLQRIGIGLVLSIIAMAVAAIVEVKRKRVATDSNLLDDATKPIPITFLWIAFQYLFLGSADLFTMAGLLEFFFTEAPIKMRSWATSLTWASLALGYYLSSVIISIVNSVTGNSSHKPWLSGSNLNHYHLERFYWLMCVLTGLNFLHYLFWAIRYKYRGTALIARDSVNAIDMKASLWHRRLSHISEKGLNVLAKKDVLPGLKNADLEKCSHCMTGKQTRVSFKKHPPSRKLELLQLVHSDVCGPLKVKSFSGALYFVTFIDDCSKKLWVYAIKTKDQVLEKFKEFHALVERQSGKKLKCVRSDNGGEYCGPFDVYCKQQGIAHEKTPPKTPQLNGLAERTNRTLVERVRCMLSEAKLPQHYWGEALYAAVHVINLTPTVVLNSEVSDKIWFGKNVKYDHLRVFGCKAFVHVPKDERSKLDAKSKQCIFIGYGQNEFGYKFYDPIGNKLIRSRDVVFMEDQTIEDIDKVEKTTPKKDVSLFNIDPVRLPFHNLDTIGGDVQNGEPHEYVDDQQLGEEVYIPADNDEANDMSQDENLGEAPESSQVQLRRSNRQRQPSTRYNSDEYVTLTDEGEPEYFQEAMESDENQKWLDAMNDEMKSLHDNHTYDLVKLPKGKRALENRWIYRVKHESNSESPRYKARLVVKGFRQRKGVDFNETFSPVVKMSSIRTVLGLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPGGFQVKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSDHCVFVRKFSNDDFIILLLYVDDMLIVGKNISNIGMLKKQLGESFAMKDMGAAKQILGIRIMRDRKEKKLWMSQEYYIKRVLQRFQMENSKAVSTPLATHFKLSSKQSPSNEDETFDMKHVPYVSVVGSLMYAMVCTRPDIAHVVGTVSRFLSNPGREHWNAVKWVLRYLRGTTCMRLCFGGDKPTLEGYSDSDMAGNIDSRKSTSSYMIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWLKKFLQELGFVQDKYVLFVDSQSDIHLGKNPIFHNRSKHIDVRYHWIRDVLDAKLLELAKVHTDDNGSDMMTKALPRGKFEACCDIASLAISST 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01834 1504 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 13 571 IPR000109 GO:0016020|GO:0022857|GO:0055085
Tsu08g01834 1504 PANTHER PROTEIN NRT1/ PTR FAMILY 4.7 13 571 - -
Tsu08g01834 1504 SUPERFAMILY MFS general substrate transporter 29 567 IPR036259 -
Tsu08g01834 1504 MobiDBLite consensus disorder prediction 946 975 - -
Tsu08g01834 1504 MobiDBLite consensus disorder prediction 937 975 - -
Tsu08g01834 1504 MobiDBLite consensus disorder prediction 277 298 - -
Tsu08g01834 1504 Gene3D - 637 820 IPR036397 GO:0003676
Tsu08g01834 1504 CDD MFS_NPF4 30 565 - -
Tsu08g01834 1504 Gene3D MFS general substrate transporter like domains 3 573 IPR036259 -
Tsu08g01834 1504 ProSiteProfiles Integrase catalytic domain profile. 635 806 IPR001584 GO:0015074
Tsu08g01834 1504 SUPERFAMILY Ribonuclease H-like 644 794 IPR012337 -
Tsu08g01834 1504 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1014 1259 IPR013103 -
Tsu08g01834 1504 Pfam POT family 101 530 IPR000109 GO:0016020|GO:0022857|GO:0055085
Tsu08g01834 1504 Pfam Integrase core domain 647 743 IPR001584 GO:0015074
Tsu08g01834 1504 SUPERFAMILY DNA/RNA polymerases 1014 1455 IPR043502 -
Tsu08g01834 1504 CDD RNase_HI_RT_Ty1 1350 1487 - -
Tsu08g01834 1504 Pfam GAG-pre-integrase domain 580 629 IPR025724 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01834 Tsu-Chr8 22478253 22491243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01834 1 572 Organic Solute Cotransporters AT1G69850 70.256 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01834 - - han:110894446 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01834 08 22478253 22491243 Tsu08g01834 08 22478253 22491243 ECH