Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01788 ATGAAGAAAGAGAAACTAAACCCATTTTTACTCTTTCCAAATAAGCCTAAACTTGTTCATATTTTCATGACCCTTATGCTTCTTTATTTGATCTTCACAACCTTTGAATTCAAAACTTTTGAATCTGTTTCAGTGTCTTCAATTCTTAGGAATGAAATCCAAAATACCCATCATAGAAAAGCTTTAAACTTTGCTTCAAATGAAGCTTTTAGTGTTTACCAAGGTTCACTACATCGAAAACCAATGCAAGAGTTGCAAAAAGTTTCCACCTTGAGTTTCAATCAAGGTGATTTGAATGAAACTGGTTTGGAAAAAGACAAATTTTCTGAGATTCAAAGGGATGTTAAGGTAGCTTGGATTAAAGGGAAGAGAATGTGGGATGAAATTCAGTTTCAGAGTTTAGAAACTGAGAATATGACTAAGTTTATGTTTGAGAATCAGAAGAATCATTCTGATTCGTGTCAGCATTCAATTTCGCTATCCGGGTCTGAATTAAGGAACCAGAAAGGGATCATGGTGATTCCTTGTGGGTTGACTTTGTGGTCTCATGTTACTGTTGTTGGGACACCGCGATTGGCTCATTGGGAGAGTGATCCTAAGATAACTGTGGTGAAAGATGAGGAGGAAAAGGTTTTGGTGTCACAGTTTATGATGGAGCTTCAAGGATTGAAGGTAGTTGATGAGGAAGAACCACCTAAGATATTGCATTTCAATCCTAGGTTGAAAGGTGATTATAGTGGAAAGCCTGTGATTGAACAGAATACTTGTTATAGGATGCAATGGGGTTCTTCACTCAGATGTGAGGGATGGAAGTCTAGGGCTGATGAAGATACTGTCGATGGACAGGTGAAATGTGAAAAGTGGATTCGCGATGATGATAGCCGTTCAGAAGAGTCTAAGGCAACATGGTGGTTACCTAGAATGAtagggagaaaacacaagatcACTTTAGATTGGCCATACCCTTTTATAGAGGGAAGGTTATTTGTTCTCACCTTAACAGCAGGCTTGGAAGGTTACCATGTTAGTGTCGACGGAAAGCATGTGACGTCTTTTCCCTATCGCACGGGTTTTTCTCTTGAGGACGCTACTGGTCTATCCATAAAAGGGGATGTTGATGTGCACTCTATATATGCTGCTTCGTTACCAACATCACATCCAAGTTTTGCACCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTATTCTCGATGTGAACGTGGAGCTTTTCATTGGAATACTATCTGCAGGCAACCATTTTGCCGAACGAATGGCAGTAAGAAAATCATGGATGCAACATAAGCTAATCAAATCTTCAGATGTTGTAGCTCGATTCTTTGTCGCATTGCATGGAAGGAAAGATATAAATTTGGACATAAAGAAAGAAGCCGATTATTTTGGCGATATTATTATAGTCCCATATATGGATCATTATGACCTTGTTGTGGTGAAGACTGTAGCTATCGCTGAATATGGGATTCGTAACGTAGCTGCTAAGAATATCATGAAATGTGATGATGACACGTTTGTTCGATTGGATTCTATCATCAGTGAAGTAAGAAAAGTTGGAATTGGCAGAAGTCTCTACATTGGCAATATGAATTACCACCATACGCCCCTTCGCGACGGTAAATGGGCAGTCACATATGagGAATGGGCAGAAGAAGAGTATCCTACCTATGCTAATGGTCCAGGTTATATAATCTCATCAGACATTGCTAAGTTCATTGTCTCTAACTTCGAGGAGCACCAGTTAAAATTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTAGAGCAATTCAACAACTCAACAGCAGTTGAGTATGTGCATAGCTATAAGTTCTGCCAATTTGGGTGCATTGAAGGTTACTACACTGCACATTACCAGTCTCCAAGACAAATGATATGTATGTGGGATAAGTTGCAACACAAGGGAAAACCACTATGTTGCAACAACAGATGA 1980 0.3899 MKKEKLNPFLLFPNKPKLVHIFMTLMLLYLIFTTFEFKTFESVSVSSILRNEIQNTHHRKALNFASNEAFSVYQGSLHRKPMQELQKVSTLSFNQGDLNETGLEKDKFSEIQRDVKVAWIKGKRMWDEIQFQSLETENMTKFMFENQKNHSDSCQHSISLSGSELRNQKGIMVIPCGLTLWSHVTVVGTPRLAHWESDPKITVVKDEEEKVLVSQFMMELQGLKVVDEEEPPKILHFNPRLKGDYSGKPVIEQNTCYRMQWGSSLRCEGWKSRADEDTVDGQVKCEKWIRDDDSRSEESKATWWLPRMIGRKHKITLDWPYPFIEGRLFVLTLTAGLEGYHVSVDGKHVTSFPYRTGFSLEDATGLSIKGDVDVHSIYAASLPTSHPSFAPQMHLELLPQWKAPPILDVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSDVVARFFVALHGRKDINLDIKKEADYFGDIIIVPYMDHYDLVVVKTVAIAEYGIRNVAAKNIMKCDDDTFVRLDSIISEVRKVGIGRSLYIGNMNYHHTPLRDGKWAVTYEEWAEEEYPTYANGPGYIISSDIAKFIVSNFEEHQLKLFKMEDVSMGMWVEQFNNSTAVEYVHSYKFCQFGCIEGYYTAHYQSPRQMICMWDKLQHKGKPLCCNNR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01788 659 CDD GLECT 174 377 IPR001079 GO:0030246
Tsu08g01788 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 173 378 IPR013320 -
Tsu08g01788 659 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 170 380 IPR001079 GO:0030246
Tsu08g01788 659 Gene3D - 169 378 - -
Tsu08g01788 659 Pfam Galactoside-binding lectin 171 378 IPR001079 GO:0030246
Tsu08g01788 659 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 6 659 - -
Tsu08g01788 659 Gene3D - 409 643 - -
Tsu08g01788 659 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 659 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tsu08g01788 659 SMART Gal_bind_lectin_2 174 379 IPR001079 GO:0030246
Tsu08g01788 659 Pfam Galactosyltransferase 426 606 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01788 Tsu-Chr8 21850074 21854695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01788 2 659 Glycosyltransferase AT1G74800 58.297 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01788 K20843 - gmx:100814480 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01788 08 21850074 21854695 Tsu08g01788 08 21850074 21854695 ECH