Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01749 ATGGACTTGGCTACTCTTTTTGGAAAACTGCAGGAACACGAGATGCAACTAAATCGACTCATAGAAAGTGAagaaggagaaaagaaaaagaaagggctTGCTTTAGCTGCAACTACAAAAAATAGTGACTTTGAAGGAAGTGATAGTTCCGATGAAGATGATGAGGACATGGCCTTAATGGTtcgaaatttcaaaaaaatcatgcGACACCAAGGTAAACCAAAACAATTTCGAAATTCCCAAAAGAAAAGTGACGAAGGAACCTCTTTCAATCCAACATGCTATAATTGTGGTAAGAAAGGTCATATAAAACCGGATTGTCCACAATATCAAAAGAAACACGAGAAATCGGACAAAAGATCACAAATGGATTCAAAAGGAAGAAGGGCATTCATTGCTTGGGATGACAATGACATGGATTCATCCGACGAAAATGAGGAAGCAAACTTATGTCTCATGGCTCATCATGAAGAAAATGAGGTAAATATCGTTGAAACCAAACCCGACTTTACTTATGATGAGTTGCTCTTTATTTGTCAAGAATTAAATAATGAGTCTAggaagtttaaaaaaattgtttctaccTCTAAGAAAACTATTTCCNCACCAATCAGCACCTCATGCTATCTCGACAAAGATGAGGGAGGTAAGTCGGTAGATGAAAGTAAGTTTCAAGCTAATCCCAAAGAATCACATCTCTCTGCGGTCAAACGCATAATGAGATATCTCATTGGCACACAAAATATGGGTTTATGGTATCCTAAAGGTACGGATTGCACTTTGGTTGGGTACTCGGACTCTGATTTTGCAGGCTGCAAAATGGACCGAAAAAGTACCAGTGGAACATGCCACTTGCTTGGAAACTCCCTAGTTTCTTGGCATAGCAAAAAACAAGCAAGTGTAGCATTGTCCACTACCGAAGCGGAATATGTAGCTGCAGGCTTTATAAAAGCCCAGAGACCACAGTGTGTGTTCATTTTCGCGATTTCAGTTTCCATTCCCATTCACGTTTTCTCTCTTACTAACGGAAGAACCTTCGCGCCAAAATTCCACCGATCTCTCTCTCAGATTCCATTCGAATCCTCTCTTGTTCTTTTGATCTGCATTCTATTCTCTGTTAAGATTTCATCTTCAGATACGGTGATTGAATTGAAGTTCTGTGGAAACGAAGAATTAAACAAGGAATTGGCGTTTCGAGAAGTAGAAGGGCGGGCAATTTCCACAACATGTGGTCACCTACTCTGCACTGAAGATGCCAATAAGATATTAAGCAACGATGGAGCATGCCCTGTTTGTGATCAAGTCCTTTCAAAGAGTCTCATGAAACCTGTGGATGTCAATCCCAATGATGAATGGGTCAATATGGCCATGGCGGGAGTTTCTCCACAGATATTGATGAAGAGTGCATATAAAAGTGTGATGTTCTACATTGGGCAAAAAGAACTGGAGATGCAGTGTAAAATGAACAAGATTGTTGGTCAATGCCGGCAGAAATGTGAGATGATGCAAGAAAAGTTTACAGAAAAACTAGAGCAGTTGCATACTGCTTACCAAAAAATGGCCAAGAGGTGCCAGATGATGCAACAGGAAATTGAGAGCTTAACCAAGGACAATCAAGAACTTCAGGAAAAATTTGCTGAAAAATCCAGGTCAAAGAGAAAATTAGATGAAATGTATGATCAGCTGAGAAATGAGTTTGACTCTGTGAAGCGGTCTGCCATACAGCCTGCAAGCAACTTTTATTCCAGAAATGAGCGTGATTTGTTCTCCAACCCGCCTAACATATTGGATGAAAGAGAAACTGGTCGAAAAGGTCTGCCGGTGTTCACTCCTACCACTCCAGGACCAAGAGAGGATGTATGGCCAGCGAGGCAGAATAGCAATAACTCTGGTCACTTCGACATATCTGTTGGCTCACCAgcaaaacaaaccatcattgCAGGGGATGCTGGGAACAGAAGGATTGGTGCTCACCCTGTTTTTGGACCTGGTGCTACTGGTAACCCATCAATGAATTTGAGGAACTTGATACTCTCTCCAATAAAGCGTCCTCAGCTCTCACGTAACCGCACCAACTTATTCACATTGTAG 2091 0.3965 MDLATLFGKLQEHEMQLNRLIESEEGEKKKKGLALAATTKNSDFEGSDSSDEDDEDMALMVRNFKKIMRHQGKPKQFRNSQKKSDEGTSFNPTCYNCGKKGHIKPDCPQYQKKHEKSDKRSQMDSKGRRAFIAWDDNDMDSSDENEEANLCLMAHHEENEVNIVETKPDFTYDELLFICQELNNESRKFKKIVSTSKKTISXPISTSCYLDKDEGGKSVDESKFQANPKESHLSAVKRIMRYLIGTQNMGLWYPKGTDCTLVGYSDSDFAGCKMDRKSTSGTCHLLGNSLVSWHSKKQASVALSTTEAEYVAAGFIKAQRPQCVFIFAISVSIPIHVFSLTNGRTFAPKFHRSLSQIPFESSLVLLICILFSVKISSSDTVIELKFCGNEELNKELAFREVEGRAISTTCGHLLCTEDANKILSNDGACPVCDQVLSKSLMKPVDVNPNDEWVNMAMAGVSPQILMKSAYKSVMFYIGQKELEMQCKMNKIVGQCRQKCEMMQEKFTEKLEQLHTAYQKMAKRCQMMQQEIESLTKDNQELQEKFAEKSRSKRKLDEMYDQLRNEFDSVKRSAIQPASNFYSRNERDLFSNPPNILDERETGRKGLPVFTPTTPGPREDVWPARQNSNNSGHFDISVGSPAKQTIIAGDAGNRRIGAHPVFGPGATGNPSMNLRNLILSPIKRPQLSRNRTNLFTL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01749 696 MobiDBLite consensus disorder prediction 105 124 - -
Tsu08g01749 696 Pfam Zinc knuckle 93 109 IPR001878 GO:0003676|GO:0008270
Tsu08g01749 696 Gene3D - 502 573 - -
Tsu08g01749 696 Gene3D - 89 135 - -
Tsu08g01749 696 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 398 696 - -
Tsu08g01749 696 MobiDBLite consensus disorder prediction 622 637 - -
Tsu08g01749 696 MobiDBLite consensus disorder prediction 584 637 - -
Tsu08g01749 696 MobiDBLite consensus disorder prediction 69 91 - -
Tsu08g01749 696 CDD RNase_HI_RT_Ty1 262 313 - -
Tsu08g01749 696 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Tsu08g01749 696 MobiDBLite consensus disorder prediction 18 34 - -
Tsu08g01749 696 Coils Coil 510 572 - -
Tsu08g01749 696 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Tsu08g01749 696 MobiDBLite consensus disorder prediction 18 57 - -
Tsu08g01749 696 SUPERFAMILY Retrovirus zinc finger-like domains 84 115 IPR036875 GO:0003676|GO:0008270
Tsu08g01749 696 Coils Coil 10 30 - -
Tsu08g01749 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 444 IPR013083 -
Tsu08g01749 696 SUPERFAMILY RING/U-box 406 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01749 Tsu-Chr8 21199895 21210669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01749 222 315 Receptor kinase-like Gene Family AT4G23160 44.681 2.48e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01749 K10639 - gmx:100101885 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01749 08 21199895 21210669 Tsu08g01749 08 21199895 21210669 ECH