Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01557 ATGTCTTGGTACTCATTTAAAGATGAAAGGGTAGACACTGCTGTCAAGGGCTTGCGAGAAGAATTTGGGGAGCAGCATGTGTGGGGCACTACATGTGATGTAAGAAAAGGAGAGGATGTGAAGAAATTAGTTTCGTATGCTAAAGAAAACCTGAAATACATTGATATATGGATAAATAATGCTGGATCGAATGCATATAGCTACAAGCCACTTGCTGAAGCATCAGATGAGGATCTTATTGAGGTGGTTACAACAAACACACTTGGCTTGATGATATGCTGTCGAGAGGCAATAAAGATGATGGTGAACCAACCTCGCGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGCGTGGTGCATTTAACAAAGTCATTACAGGCTGAATTGCAGATGCAAGATGTTAAAAATGTCATGGTTCACAATCTTTCGCCAGGGATGGTTACAACGGATCTTCTTATGTCTGGCGCCAATACAAAACAGGCGAAGTTTTTCATTAATGTCTTGGCTGAACCAGCTGAAGTGGTTGCAGAATACTTAGTTCCAAACATTAGATCTATTCCTGCCAACAGATCAATGAAGCCAACATACATCCGGTTCCTCACGGGATTGAAAGCCTATTCCCAAATATTTTCAAGATTTGCATTTGGGGCAAGGAGGAACCGGTACATCATTGAAGATTGA 735 0.4163 MSWYSFKDERVDTAVKGLREEFGEQHVWGTTCDVRKGEDVKKLVSYAKENLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVMVHNLSPGMVTTDLLMSGANTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANRSMKPTYIRFLTGLKAYSQIFSRFAFGARRNRYIIED 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01557 244 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 116 IPR002347 -
Tsu08g01557 244 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 148 IPR002347 -
Tsu08g01557 244 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 52 63 IPR002347 -
Tsu08g01557 244 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 116 144 IPR020904 GO:0016491
Tsu08g01557 244 Gene3D - 5 219 - -
Tsu08g01557 244 PRINTS Glucose/ribitol dehydrogenase family signature 52 63 IPR002347 -
Tsu08g01557 244 PRINTS Glucose/ribitol dehydrogenase family signature 102 118 IPR002347 -
Tsu08g01557 244 PRINTS Glucose/ribitol dehydrogenase family signature 129 148 IPR002347 -
Tsu08g01557 244 PRINTS Glucose/ribitol dehydrogenase family signature 153 170 IPR002347 -
Tsu08g01557 244 PANTHER CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC 6 244 - -
Tsu08g01557 244 Pfam short chain dehydrogenase 7 172 IPR002347 -
Tsu08g01557 244 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 195 IPR036291 -
Tsu08g01557 244 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 6 244 - -
Tsu08g01557 244 CDD SDR_c 32 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01557 Tsu-Chr8 18241927 18249390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01557 20 169 Acyl Lipid Metabolism Gene Families AT1G24360 29.677 1.21e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01557 K13606 - gmx:100797874 438.728