Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01266 ATGTTTCAACATTTCATTTCTTGTTTTACCTTTCTTCATAACACCAAATCACTCTTCAACAAACCAAGAAAACATCGACCCAACAACAGATTTTCTTCCATTTCGGACATATCAATCTCTTCTTTCATTCACATGGAAGTATCCGGTCAATTTCGACAAGTTTTCAAGCTTATCGACACAAACGGCGATGGAAAGATTTCAACCACAGAGCTTTGTGAAATGCTTTCAGCTCTAGGATACAATAAGTACACAGCTACTAAAGAAGCTGAGAATATGATAAAAGCATTGGACTTTAATGGAGATGGATTTGTAGATATAGATGAGTTCATGTTTGTCATGAAAGAAGATAGCTATGGTAAAGGAAAAGAACATGATCATGATGAGTATTTAATGGATGCTTTTCTTGTGTTTGATAGTGATAAAAATGGATTAATCTCACCAAAAGAATTGAGGAGTGTTTTGGTTAATCTTGGATGTGATAATTGTAGTTTAAGGGAGTGTAAACGTATGATTAAAGGGGTTGATAAGAATGGTGATGGGTTTGTGGATTTTGAAGAATTTCGATCTATGATGAACTTAAAATTTAGAGCTTGA 594 0.3401 MFQHFISCFTFLHNTKSLFNKPRKHRPNNRFSSISDISISSFIHMEVSGQFRQVFKLIDTNGDGKISTTELCEMLSALGYNKYTATKEAENMIKALDFNGDGFVDIDEFMFVMKEDSYGKGKEHDHDEYLMDAFLVFDSDKNGLISPKELRSVLVNLGCDNCSLRECKRMIKGVDKNGDGFVDFEEFRSMMNLKFRA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01266 197 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Tsu08g01266 197 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Tsu08g01266 197 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 40 192 - -
Tsu08g01266 197 Pfam EF-hand domain pair 128 191 IPR002048 GO:0005509
Tsu08g01266 197 Pfam EF-hand domain pair 51 114 IPR002048 GO:0005509
Tsu08g01266 197 CDD EFh 50 114 IPR002048 GO:0005509
Tsu08g01266 197 Coils Coil 190 197 - -
Tsu08g01266 197 ProSitePatterns EF-hand calcium-binding domain. 59 71 IPR018247 -
Tsu08g01266 197 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Tsu08g01266 197 Gene3D - 13 115 - -
Tsu08g01266 197 ProSiteProfiles EF-hand calcium-binding domain profile. 162 197 IPR002048 GO:0005509
Tsu08g01266 197 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Tsu08g01266 197 Gene3D - 118 196 - -
Tsu08g01266 197 CDD EFh 129 191 IPR002048 GO:0005509
Tsu08g01266 197 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Tsu08g01266 197 SUPERFAMILY EF-hand 46 192 IPR011992 -
Tsu08g01266 197 PANTHER CALCIUM-BINDING PROTEIN CML26-RELATED 40 192 - -
Tsu08g01266 197 SMART efh_1 88 116 IPR002048 GO:0005509
Tsu08g01266 197 SMART efh_1 129 157 IPR002048 GO:0005509
Tsu08g01266 197 SMART efh_1 50 78 IPR002048 GO:0005509
Tsu08g01266 197 SMART efh_1 166 194 IPR002048 GO:0005509
Tsu08g01266 197 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01266 Tsu-Chr8 14181274 14182112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01266 24 196 EF-hand Containing Proteins AT1G24620 41.758 4.49e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01266 - - gmx:100799475 266.159