Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01228 ATGGCAGAAAACCTTCCAATCGTCCTTGTTCTTGGTCCACCAACGTGTTTCTCAACCTTCGAATCACTTTACTCTCACAAATTCAATTTCCTTAACCCCAAAACCTCTAACCTTCCACTTCAACAATTCATGGTTACCAACCGCCACAATCCATCAACAATTCCCGCCATATTCTGCAGCGCTGCATATTCCATCACTGCCGATATCCTCAATCTCTTCCCATCGCTCTGTCTTGTCGTCACCTCCAGTGTTGGAACTGACCACATTGACCTTCATGAGTGTTCTCGCCGTGGAATTCAGGTTGCCGGTGCCGGAGGAGTTTTGTCGGAGGATGTGGCTGATGCGGCAGTGGCGTTGCTTATTGCTGTTATGAGGAAAGTGACGGTGGCAGATCGATATGTGAGGACGCCGCCGGACCATTCTGGTCCTTGGGATTTTCCCCTTGGCTATAAGTTATCAGGCAAGCGAGTTGGAATTGTTGGATTGGGAAGTATTGGCATGGGAGTCGCAAAGCGTCTCGAGTCATTTGATTGCATTATCTCGTACCATTCTAAgcataaaaaaacatcaatttcATACCCTTTCTATTCCAACATTGTTGATCTCGCAACTTCTAGCGACGCACTTGTGGTGTGTTGCGCACTAAATAACGAAACACGACACATAATAAATAGGGAAGTCCTTTTAGCATTAGGAAAAAAAGGGTTTATTGTCAATGTTGGAAGAGGAAGTCTTATTGATGAGAAACAATTAATCAAGTGTTTGATGGATGGAGAAATTGGAGGTGCTGGTTTGGATGTGTTTGAGAATGAACCTCATGTTGATGAAGATCTCTTTGCAATGGATAATGTTGTTTTATCTCCACATTCAGCTTCCCTTACTGTTGAATCAACATTAAGTTTGTGTGAACTTGTGGCTGGGAATTTAGAAGCTTTCTTCTTAAATAAGCCACTGATTAGTCCAGTGATGTTGGTTGAGTAA 981 0.4271 MAENLPIVLVLGPPTCFSTFESLYSHKFNFLNPKTSNLPLQQFMVTNRHNPSTIPAIFCSAAYSITADILNLFPSLCLVVTSSVGTDHIDLHECSRRGIQVAGAGGVLSEDVADAAVALLIAVMRKVTVADRYVRTPPDHSGPWDFPLGYKLSGKRVGIVGLGSIGMGVAKRLESFDCIISYHSKHKKTSISYPFYSNIVDLATSSDALVVCCALNNETRHIINREVLLALGKKGFIVNVGRGSLIDEKQLIKCLMDGEIGGAGLDVFENEPHVDEDLFAMDNVVLSPHSASLTVESTLSLCELVAGNLEAFFLNKPLISPVMLVE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01228 326 PANTHER D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN-RELATED 1 322 - -
Tsu08g01228 326 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 54 136 - -
Tsu08g01228 326 Gene3D - 109 294 - -
Tsu08g01228 326 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 117 291 IPR006140 GO:0051287
Tsu08g01228 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 109 292 IPR036291 -
Tsu08g01228 326 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 157 184 IPR029752 -
Tsu08g01228 326 CDD HPPR 6 313 - -
Tsu08g01228 326 Gene3D - 51 317 - -
Tsu08g01228 326 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 1 322 - -
Tsu08g01228 326 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 56 322 IPR006139 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01228 Tsu-Chr8 13605455 13607532 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01228 - K15919 gmx:100776772 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01228 08 13605455 13607532 Tsu08g01228 08 13605455 13607532 ECH