Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01227 ATGCAAGTGCTTAATCCTTCaatgctatttgcacccccaaatacaaaagaaaaatttatgaatgaacaAAAACAATGTCTTGATACATCTTTTCTACCTTGTCaaattaccaaaataccctCAGAATTCATTTGGCCAGAACATGAAAAACCATGTCTAACACCACCAAAACTTGAAGTTCCACCAATTGACTTAAAAGCATTTTTCTCTAATGATCCAAAAGCAATTTCAAATGCTTGTTCAAAAGTGAATGATGCATGCAAAAAACATGGTTTTTTCCTAGTTGTTAATCATGGAGTTGATAAAAATCTCATAGCTCAAGCTCATAAGCTTGTTGATGATTTCTTTTGCATGCAACTATCTGAAAAACAAAGAGCTCAAAGAAAAGTTGGAGAACATTGTGGTTATGCTAatagtttcattggaagatttTCTTCTAAACTTCCTTGGAAGGAAACACTTTCTTTTCGTTACACTGCTGATGAGTCTTGTAGAACTGTGGAGGACTATTTTGTAAATGTCATGGGGGAAGATTTCAGACAATTTGGGAGTGTGTACCAAGACTATTGTGAAGCTATGAGCAATCTTTCTCTTAGGATCATGGAGCTTCTTGGGATGAGTCTAGGAGTTGACAAAGAATATTTTAGAGAACTCTTTGAAGGAAATGAGTCAGTAATGAGATTGAATTACTATCCACCATGTAAAAATCCTGATTTAGCATTAGGAACTGGACCCCATTGTGACCCTACTTCCTTAACTATTCTCCACCAAGATCAAGTTGAAGGTCTCCAAGTGCTTGTAGATGGAACATGGCACTCAGTTGTTCCCAAAGAAGATGCCTTTGTGGTCAACATTGGTGATACATTTATGgctCTATCAAATGGGATATTCAAGAGTTGCTTGCATAGAGCAGTTGTAAATGACAAAATAGTGAGAAAATCACTTGCATTTTTTCTATGTCCAAGTGAAGACAAAGTGGTAACTCCTCCAAAAGAGCTTATAAACAAGGATAATCCAAGGATATATCCAATCTTCACATGGCCAAGTTTACATGAATTTACACAAAAACATTATAGGGCTGATGAAAGAACACTTGATGCTTTTTCAAGGTGGCTACAAGAGAAAAACAACTAA 1134 0.3351 MQVLNPSMLFAPPNTKEKFMNEQKQCLDTSFLPCQITKIPSEFIWPEHEKPCLTPPKLEVPPIDLKAFFSNDPKAISNACSKVNDACKKHGFFLVVNHGVDKNLIAQAHKLVDDFFCMQLSEKQRAQRKVGEHCGYANSFIGRFSSKLPWKETLSFRYTADESCRTVEDYFVNVMGEDFRQFGSVYQDYCEAMSNLSLRIMELLGMSLGVDKEYFRELFEGNESVMRLNYYPPCKNPDLALGTGPHCDPTSLTILHQDQVEGLQVLVDGTWHSVVPKEDAFVVNIGDTFMALSNGIFKSCLHRAVVNDKIVRKSLAFFLCPSEDKVVTPPKELINKDNPRIYPIFTWPSLHEFTQKHYRADERTLDAFSRWLQEKNN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01227 377 SUPERFAMILY Clavaminate synthase-like 33 361 - -
Tsu08g01227 377 Gene3D - 30 360 IPR027443 -
Tsu08g01227 377 PRINTS Isopenicillin N synthase signature 83 100 - -
Tsu08g01227 377 PRINTS Isopenicillin N synthase signature 246 267 - -
Tsu08g01227 377 PRINTS Isopenicillin N synthase signature 281 307 - -
Tsu08g01227 377 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 321 IPR005123 -
Tsu08g01227 377 Pfam non-haem dioxygenase in morphine synthesis N-terminal 60 162 IPR026992 -
Tsu08g01227 377 PANTHER GIBBERELLIN 20-OXIDASE 27 373 - -
Tsu08g01227 377 Pfam 2OG-Fe(II) oxygenase superfamily 223 321 IPR044861 -
Tsu08g01227 377 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 27 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01227 Tsu-Chr8 13599491 13601764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01227 31 359 Glycosyltransferase AT5G59530 28.902 3.25e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01227 K05282 - gmx:100775693 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01227 08 13599491 13601764 Tsu08g01227 08 13599491 13601764 ECH