Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01218 ATGGcggacaacaacaacaacaaccacaacagTATCACCTCTCCACTCCTCACCTCCGATCATCTAATCCTCACCGTCGATTCCGACACAAACTCTGTTTCCACCACCGACACGTGTCCAATTTCCAATCCATTCATCGCTTTAGGTTGTAAAGACGGCGGAGAGTTGACTATTCCGGCGGCGATAACGGTGGACCCGTTCGATAACTATAAAGCAGGAATTGAAGGTTTATATGAATGGGTGAAGACTATAGTGTGTTTACCTATTGCTTTGATTCGGTTAGTGATATTTGGATTGTGTTTAGCGATTGGTTATGTTGCTACTAAGTTAGCACTTTATGGTTGGAAAGATAAAGAAAATCCTATGCCTAAGTGGAGATGTAGAATTATGTGGGTCACTAGAATATCTGCCAGATTCATTCTCTTCTCTTTTGGCTATCATTGGATAAAACGGAAGGGAAGACCTGCCCCAAGGGATGTTGCTCCAATAATCGTATCTAATCATGTATCTTATATTGAGCCtatcttctatttttatgaattatttcCCACCATTGTGGCATCTGAGTCTCATGACTCCATACCTTTTGTTGGCACAATCATTAGAGCAATGCAGgTCATATATGTTAACAGGTTCTCACAATCATCAAGGAAGCAGGCTGTCAGAGAAATAAAGAGAAGGGCTTCTTGCGATAGATTTCCTCGAGTACTTTTATTTCCCGAGGGAACGACGACTAACGGCCGGAACCTTATTTCCTTCCAACTCGGTGCATTTATCCCTGGGTACCCAATCCAGCCTATAATTGTACGCTATCCTCATGTGCACTTTGATCAATCTTGGGGTAACGTTTCTTTGGGACAGCTTATGTTCAGGATGTTCACTCAATTCCATAACTTCTTCGAGGTTGAATATCTTCCTGTCATTCCACCTCTCGATGATAAGGAAACTGCTGTGCATTTTCGTAAAAGGGCTAGCCACGCGATTGCAACTGCATTGAATACTGTCCAAACTGGACATTCTTATGGAGATATAATGCTTCATATGAAAGCTCAAGAAGCAAAACAGGAGAACCCCTCAAGGTATATGGTTGAAATGGCCAAGGTGGAATCATTATACCATATCAGCAGCTTGGAAGCTGTGGACTTTTTGGATAAATTCTTAGCTATGAATCCCGATTCCAGTGGTTGTGTTCAATATCGTGACTTTGTGAGCGTTTTAAGACTCAAGGCTTGTCCTCTTTCTGAAAAGATGTTTTCATTCATTGATGTGGAGAAGTGTGGGAAAATTACGTTTAGACAGTTCTTGTATGGATCTGCACATGTCATGAAGCAGCCAGGGTTCCATCAAGCTTGTGAAGCAGCCTTTGCTGAGTGTGGCGGTGCAGTAAAAGGCTACATCGTGGAAGAAGAATTACGAGATTTCATCCTATCTGCTATCCCCAGCTGGAATGAAGACGAGGTCCATGATCTATTTGTGTTATTTGATGTCGATAAAGATGGAAGAATTTATAAGGATGAATTTCTTTCATGCCTGAGACGAAATCCTCTCATCGTTGCTATTTTCATACCTCAACCGCAGCAGCACAAGGAATCATATGGTAATGGAGTACTAGAGATACTGTGA 1623 0.4073 MADNNNNNHNSITSPLLTSDHLILTVDSDTNSVSTTDTCPISNPFIALGCKDGGELTIPAAITVDPFDNYKAGIEGLYEWVKTIVCLPIALIRLVIFGLCLAIGYVATKLALYGWKDKENPMPKWRCRIMWVTRISARFILFSFGYHWIKRKGRPAPRDVAPIIVSNHVSYIEPIFYFYELFPTIVASESHDSIPFVGTIIRAMQVIYVNRFSQSSRKQAVREIKRRASCDRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPIIVRYPHVHFDQSWGNVSLGQLMFRMFTQFHNFFEVEYLPVIPPLDDKETAVHFRKRASHAIATALNTVQTGHSYGDIMLHMKAQEAKQENPSRYMVEMAKVESLYHISSLEAVDFLDKFLAMNPDSSGCVQYRDFVSVLRLKACPLSEKMFSFIDVEKCGKITFRQFLYGSAHVMKQPGFHQACEAAFAECGGAVKGYIVEEELRDFILSAIPSWNEDEVHDLFVLFDVDKDGRIYKDEFLSCLRRNPLIVAIFIPQPQQHKESYGNGVLEIL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01218 540 Pfam Acyltransferase 161 266 IPR002123 GO:0016746
Tsu08g01218 540 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 131 318 - -
Tsu08g01218 540 SUPERFAMILY EF-hand 373 521 IPR011992 -
Tsu08g01218 540 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Tsu08g01218 540 Pfam EF-hand domain pair 463 513 IPR002048 GO:0005509
Tsu08g01218 540 Gene3D - 363 518 - -
Tsu08g01218 540 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 39 523 - -
Tsu08g01218 540 PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED 39 523 - -
Tsu08g01218 540 CDD LPLAT_LPCAT1-like 137 345 IPR045252 GO:0008374
Tsu08g01218 540 CDD EFh 464 508 IPR002048 GO:0005509
Tsu08g01218 540 SMART efh_1 486 514 IPR002048 GO:0005509
Tsu08g01218 540 SMART efh_1 413 441 IPR002048 GO:0005509
Tsu08g01218 540 SMART plsc_2 162 272 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01218 Tsu-Chr8 13465472 13475294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01218 114 343 Acyl Lipid Metabolism Gene Families AT1G80950 29.615 6.63e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01218 K13510 - gmx:100818109 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01218 08 13465472 13475294 Tsu08g01218 08 13465472 13475294 ECH