Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01198 ATGATAACTTTCAACTCAAGAAAGGGACTAATCTTAAGTTCAAAAGAATTTGCTGATGCAGCTTCATGGTATTGTGCTATTACTCTTGTAGCCCTCATACTTCTAACCATATTTAGAGAAAGTTCATCTATGATTCAAAATAATCATGATCACAACATCATAGAGACCAATCTTTTCATGTCAAATAAACCATATTGTGATGAAATATATGTGGTTGGTGAAGGTGAGACACTTAACACAATCAGTGATAAGTGTAATGATCCTTTTATTGTTGAGAATAATCCTCATATACATGATCCTGATGATGTTTTCCCTGGCCTTGTTATCAAGATTACACCTAATTCACATCACCATAACTAG 360 0.3333 MITFNSRKGLILSSKEFADAASWYCAITLVALILLTIFRESSSMIQNNHDHNIIETNLFMSNKPYCDEIYVVGEGETLNTISDKCNDPFIVENNPHIHDPDDVFPGLVIKITPNSHHHN 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01198 119 Gene3D LysM domain 60 119 IPR036779 -
Tsu08g01198 119 PANTHER EMBRYO SAC 1 3 117 - -
Tsu08g01198 119 Pfam LysM domain 70 111 IPR018392 -
Tsu08g01198 119 CDD LysM 69 111 IPR018392 -
Tsu08g01198 119 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN PROTEIN 3 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01198 Tsu-Chr8 13293280 13293639 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01198 - - gmx:100306578 138.658