Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01169 ATGACGACTCCGTCACCGGAAGCGGTTACAACCTTCATGCGTATCACCGGAGCACCGGAGTTCGTTGCCGTTCAGAAATTAGAGGAATATGGAGGCAATCTAAATGAAGCTGTGAATGCGCATTTAATTGAAGGAAACCGACACATTCTGGAGCAAAATCTTGCTGCCACTGCAACTCCACACTATAATTACTCTGAAGCAAATAATCAAAGCAACCAAAACCGCGCCGGGTCACGTGGAATTTTGCCTTTTTTCAATGCTGCTAGAAGATTTAGACCTTCACTGCTACTTGACTCGAACTATAGGAGAGAACTTAGAGATCTATGTAATGGGTTGGGTACTACTACGCTTTCAAGTAGTACACCACCACGTGGTTCTCCTCAAGGAGAGGCGAGGGAATTTCCTACCGGGAATGATAGTGCACTTGTGTCTCCCTATCGACCAGGATTGAGCTATGCAGGTGCAGTTAACAATGGAAGTTTATCATCTCATGGTCAAGGATATTATGGGACAAATGATTATCAAAATGACTACCCTTTAGCTCAGTCAATCTCTCCACGTGTTCGTGAACAAGATTTAGAGGATGCAATGATTCAAGCTGCAATTGAAGCCTCAAAAGAGGAGAGCAGAGAACGCTCTTCATGGAATGCTCCTAATGATTTTTCCGACGATGAGCTTCCTCAAAGTATCTTTcatcaagaagatgatgatttgGCTCATGTCATTTCACTGTCCTTACAGACTGCAGAGCAAGAGGAAGCACTACGTGAGCTTCTAGTTAAAGAGGAAAAGGAAGTAGTTGGCATTCATGCTTTATTAGCCAGGGGAGAGAAAACCAACACAAGCAGAAGCAGACTAGAGCCAGGACCATCATCCAGTCGAAATGTAGCTTCAGATGTTGCACAACCAGTCACTAATAATCCATTGAACCAGAATGCTGGTGGTCATCATCAAGTACATGGAGACCCATTCGTTGCTGAGAAGTGGGGGGGTATTTCTTCTGACGAGCTCAACGAAGCATTGCTGATTGAAACTGCACTTTTTAGTGAAATTCCCAATCACAGTTCTCACAAAAGTTCATCTTTGCCTGGCCTGCAACATCATTCAGGAAAAAATGTGGATCCCAAGATGCAGTCTTCATCCAGTTCAGCATCTCAATTATTAGCTGAGACTCAATTACTAAGACAACAACAGGATGCTGACTACTTAGCATCACTACTAGTTGATAAACAAAAAGAATTGAATTCTCTCAAAAAAGCTGAAACCAATTCCTCAAAGAAAGAAGTATCACATGAAAAGATGCCTAAAAGAACGGAATTGGAGAAAAAACCTGATACAAAGAAGATCATACTTCCAAATGAACCACCATTAGGTGATGAAAAAGCAATTACTATTGTTGTTCGAATGCCGGATGGTGGTCGTTGTGAACGCCGCTTCTTCAAAACTGACAAGCTTCAGCTTCTTTTTGATTTCATAGACATTTCTGGAGCAGTGGAGCCTGGCACTTATAGAGTTGTAAAGTCATACCCGCGGCGAGCATACAGTATTAAAGATAGCTCAGCTACCTTGAATGAAGTAGGCCTTAGCAACAAGAATGAAGCTTTATTTCTGGAGTTGATTTAG 1623 0.4184 MTTPSPEAVTTFMRITGAPEFVAVQKLEEYGGNLNEAVNAHLIEGNRHILEQNLAATATPHYNYSEANNQSNQNRAGSRGILPFFNAARRFRPSLLLDSNYRRELRDLCNGLGTTTLSSSTPPRGSPQGEAREFPTGNDSALVSPYRPGLSYAGAVNNGSLSSHGQGYYGTNDYQNDYPLAQSISPRVREQDLEDAMIQAAIEASKEESRERSSWNAPNDFSDDELPQSIFHQEDDDLAHVISLSLQTAEQEEALRELLVKEEKEVVGIHALLARGEKTNTSRSRLEPGPSSSRNVASDVAQPVTNNPLNQNAGGHHQVHGDPFVAEKWGGISSDELNEALLIETALFSEIPNHSSHKSSSLPGLQHHSGKNVDPKMQSSSSSASQLLAETQLLRQQQDADYLASLLVDKQKELNSLKKAETNSSKKEVSHEKMPKRTELEKKPDTKKIILPNEPPLGDEKAITIVVRMPDGGRCERRFFKTDKLQLLFDFIDISGAVEPGTYRVVKSYPRRAYSIKDSSATLNEVGLSNKNEALFLELI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01169 540 PANTHER FAS-ASSOCIATED PROTEIN 1 540 - -
Tsu08g01169 540 Pfam UBX domain 459 538 IPR001012 GO:0005515
Tsu08g01169 540 MobiDBLite consensus disorder prediction 278 314 - -
Tsu08g01169 540 MobiDBLite consensus disorder prediction 112 143 - -
Tsu08g01169 540 MobiDBLite consensus disorder prediction 112 126 - -
Tsu08g01169 540 Pfam Ubiquitin interaction motif 194 209 IPR003903 -
Tsu08g01169 540 Pfam Ubiquitin interaction motif 233 249 IPR003903 -
Tsu08g01169 540 SMART uim 233 252 IPR003903 -
Tsu08g01169 540 SMART uim 193 212 IPR003903 -
Tsu08g01169 540 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 9 ISOFORM X1 1 540 - -
Tsu08g01169 540 Gene3D - 459 539 - -
Tsu08g01169 540 CDD UBA_Ubx1_like 6 41 - -
Tsu08g01169 540 SUPERFAMILY Ubiquitin-like 449 534 IPR029071 -
Tsu08g01169 540 ProSiteProfiles UBX domain profile. 458 536 IPR001012 GO:0005515
Tsu08g01169 540 MobiDBLite consensus disorder prediction 353 385 - -
Tsu08g01169 540 MobiDBLite consensus disorder prediction 204 218 - -
Tsu08g01169 540 Pfam UBA-like domain 7 45 - -
Tsu08g01169 540 SMART ubx_3 455 539 IPR001012 GO:0005515
Tsu08g01169 540 MobiDBLite consensus disorder prediction 418 440 - -
Tsu08g01169 540 MobiDBLite consensus disorder prediction 203 226 - -
Tsu08g01169 540 CDD UBX 464 538 - -
Tsu08g01169 540 MobiDBLite consensus disorder prediction 278 322 - -
Tsu08g01169 540 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 194 212 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01169 Tsu-Chr8 12918735 12925444 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01169 - K18726 gmx:100795740 538.11