LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01148	ATGGCTGCTACCGCTACTACCTCCGCTTCATTCTCTCGCTTCTCCATCATCTCAAAACCATCTTCACAACCACAATTTAACCTCTTCAACTTCCCTAACCGAACCGAATCTCTCAATTCTCGAACCGGCATTGACCGGTTCAGATGTTCAGCCGGTGATACCGGTTTATTCACGAAACTCGGCCGGTTACTGAAGGAGAAAGCGAAAAGCGATGTAGAGAAAGTATTCTCTGGTTTCTCGAAGACTCGTAACAATCTCTCTGTCATTGATGAGCTTCTCCTTTACTGGAACCTCTCTGATACCGATAAAGTCCTCGATGAACTAGAAGAGGCTCTTTTAGTATCAGATTTTGGACcaaaaattactataaaaataGTGGAGAATTTGCGTGAGGATATACTTTCAGGGAAGCTTAAATCAGGGAGTGAGATAAAGGAAGCACTGAAGAGAAACGTTTTGGATTTGTTAAGCAACAAGGGGAGTAAAACTGAACTTAAACTTGGATTCAGgaaACCAGCCGTAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTGGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGATCAGCTAGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTATGGCTGAAACTGAGAAAGCGAAGGCATCAGTAGTGCTTTCACAGGCTGTAAAAAGAGGAAAACAGGAAGGTTATGATATTGTATTATGTGATACATCTGGACGTTTACACACCAATTACAGGCTAATGGAAGAGTTAATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTGCTGGTGCACCCAATGAGATCTTACTGGTTCTGGATGGGACCACCGGTTTGAATATGTTGCCACAAGCCAGAGAGTTCAATGAAGTTGTGGGTGTGACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCAAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCAGAAGCATTTGTCAATGCCATCTTTACATAA	1125	0.4222	MAATATTSASFSRFSIISKPSSQPQFNLFNFPNRTESLNSRTGIDRFRCSAGDTGLFTKLGRLLKEKAKSDVEKVFSGFSKTRNNLSVIDELLLYWNLSDTDKVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGSEIKEALKRNVLDLLSNKGSKTELKLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGDTFRAAASDQLEIWAERTGCEIVMAETEKAKASVVLSQAVKRGKQEGYDIVLCDTSGRLHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFT	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01148	374	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	347	360	IPR000897	GO:0005525\|GO:0006614
	Tsu08g01148	374	Gene3D	-	164	374	IPR027417	-
	Tsu08g01148	374	SMART	SRP54_N_2	75	156	IPR013822	GO:0005525\|GO:0006614
	Tsu08g01148	374	CDD	FtsY	173	372	-	-
	Tsu08g01148	374	PANTHER	BNAA04G26420D PROTEIN	34	373	-	-
	Tsu08g01148	374	Gene3D	-	62	163	IPR042101	-
	Tsu08g01148	374	SMART	SRP54_3	172	374	IPR000897	GO:0005525\|GO:0006614
	Tsu08g01148	374	TIGRFAM	ftsY: signal recognition particle-docking protein FtsY	101	373	IPR004390	GO:0006614
	Tsu08g01148	374	PANTHER	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	34	373	-	-
	Tsu08g01148	374	SMART	AAA_5	171	344	IPR003593	-
	Tsu08g01148	374	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	169	373	IPR027417	-
	Tsu08g01148	374	SUPERFAMILY	Domain of the SRP/SRP receptor G-proteins	72	149	IPR036225	-
	Tsu08g01148	374	Pfam	SRP54-type protein, helical bundle domain	101	150	IPR013822	GO:0005525\|GO:0006614
	Tsu08g01148	374	Pfam	SRP54-type protein, GTPase domain	172	373	IPR000897	GO:0005525\|GO:0006614

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g01148	Tsu-Chr8	12637668	12645321	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01148	K03110		-	gmx:100791073	619.772

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g01148	08	12637668	12645321	Tsu08g01148	08	12637668	12645321	ECH