Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01139 ATGCAAAGTACAACCACAGAAAGGTATGCAGTGGTGACTGGAGCAAACAAAGGAATTGGGTTTGAAATTGTAAGGCAATTAGCTTCAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAGaaaagaggtcttcaagctTTGGAAACACTCAAAGCTTCTGGTTTATCTGATTTTGTTGTCTTTCATCAACTTGATGTGGCTGATGCTTCAAGTGTAGCCTCTCTTGCAGATTTTGTCAAATCCCAATTTGGCAAACTTGATATTCTGGTTAACAATGCTGGAATTTCCGGAATCGAAATCAACGACAACGATTTATTCACTTCAGCAATCATTACGAACGGGCAAGCACTATCCGATGATGAGTTGAGAAGGGCAACGACACCAACGTATGAGTTAGCGAAAGAATGCATACAAATTAATTATCACGGTGCTAAAACAACATTCGAATACCTTCTTCCCCTTCTCCAATTATCTGATTCACCAAGAGTTGTCAATGTTTCATCATTTTTGGGCAAGATAGAGAATGTATCAAATGAATGGGCCAAAGGAGTATTTAGTGATGTTGATAATTTTACAGAAGAGAGAATAGATGAAGTGTTAAAGGAGTTCATCAAAGATTATGAAGAAGGGTCCTTAGAAAGAAAAGGTTGGCCTAGGTTTGCAGCTGCCTATGTTGTTGCTAAAGCTTCTTTAAATGCATATACGAGAATTATTGCGAAGAAATATCCTAGTTTCTGCATCAATTGTGTTTGCCCTGGTTATGTCAAAACAGATATAACTGCTAATACTGGTTTCTTTACCGTTGAAGAAGGTGCTTCTAATCCGGTTAGGTTAGCACTACTTCCCAATGGTAGTCCGTCTGGCCTCTTCTATTTCCGAAATGAAGTATCTTCATTTTGA 903 0.3787 MQSTTTERYAVVTGANKGIGFEIVRQLASAGIKVVLTARDEKRGLQALETLKASGLSDFVVFHQLDVADASSVASLADFVKSQFGKLDILVNNAGISGIEINDNDLFTSAIITNGQALSDDELRRATTPTYELAKECIQINYHGAKTTFEYLLPLLQLSDSPRVVNVSSFLGKIENVSNEWAKGVFSDVDNFTEERIDEVLKEFIKDYEEGSLERKGWPRFAAAYVVAKASLNAYTRIIAKKYPSFCINCVCPGYVKTDITANTGFFTVEEGASNPVRLALLPNGSPSGLFYFRNEVSSF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01139 300 Pfam short chain dehydrogenase 9 176 IPR002347 -
Tsu08g01139 300 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 8 300 - -
Tsu08g01139 300 Gene3D - 1 300 - -
Tsu08g01139 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 170 IPR002347 -
Tsu08g01139 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Tsu08g01139 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 IPR002347 -
Tsu08g01139 300 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 8 300 - -
Tsu08g01139 300 CDD carb_red_PTCR-like_SDR_c 8 300 IPR045313 GO:0016616
Tsu08g01139 300 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 212 240 IPR020904 GO:0016491
Tsu08g01139 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 286 IPR036291 -
Tsu08g01139 300 PRINTS Glucose/ribitol dehydrogenase family signature 156 172 IPR002347 -
Tsu08g01139 300 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Tsu08g01139 300 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Tsu08g01139 300 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Tsu08g01139 300 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01139 Tsu-Chr8 12535824 12545006 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01139 11 265 Acyl Lipid Metabolism Gene Families AT1G24360 22.868 2.05e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01139 K15095 - gmx:100801677 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01139 08 12535824 12545006 Tsu08g01139 08 12535824 12545006 ECH