Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01133 ATGGGAGAACATACAGAAAGGTATGCAGTTGTGACTGGATCAAACAAAGGAATTGGATTAGAGATAGTTAAGCAGTTAGCTTCAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGTGaaaagaggtcttcaagctTTGGAAACATTCAAAGACTCTGGTTTATCTGATTTTGTTGTGTTTCATCAACTTGATGTTGCTGATGCTTCGAGTGTAGCATCTCTTGCAGATTTTGTCAGATCCCAATTTGGCAAACTTGATATTCTGGTTAACAATGCTGGGATTGGCGGAATTGAAATTAAAGACAGTGAATTATACAGTCGAGTACTCATTACAAACGGGGCACTATCTGACGAGGAATTGGAAAGGACGATGACACATACATATGAGTTAGCTAAAGAATgcatacaaataaattattatggTGCTAAAACAACATTGGAATACCTTCTTCCCCTTCTCCAATTATCTGATTCACCAAGAGTTGTCAATGTTTCATCAGGATTGGGCAAGATAGAGTGTGTATCAAATGAATGGGCTAAAGGAGTCTTCAGTGATGTCGATAACCTTACAGAAGAGAGAATAGATGAAGTTATAAAGGAGTTTATCAAAGATTATGAAGAAGGGTCTTTGGAAAGAAAAGGTTGGCCTAGGTTTTTGGCTGCCTATACTGTTGCTAAAGCTTCGATGAATGCGTATACAAGAATTATTGCGAAGAAATATCCTACTTTCCGCATCAATTGTGTTTGTCCCGGTTATGTCATAACTGACATAACTGCTAATACTGGTTTCTTCACGGTAGAAGAAGGTGCTTCTCATCCGGTTAGATTAGCACTACTTCCTAATGATGGTCCATCTGGTGTTTACTATATCCGAAATGAAGTCGCGTCATTTTGa 897 0.3712 MGEHTERYAVVTGSNKGIGLEIVKQLASAGIKVVLTARDVKRGLQALETFKDSGLSDFVVFHQLDVADASSVASLADFVRSQFGKLDILVNNAGIGGIEIKDSELYSRVLITNGALSDEELERTMTHTYELAKECIQINYYGAKTTLEYLLPLLQLSDSPRVVNVSSGLGKIECVSNEWAKGVFSDVDNLTEERIDEVIKEFIKDYEEGSLERKGWPRFLAAYTVAKASMNAYTRIIAKKYPTFRINCVCPGYVITDITANTGFFTVEEGASHPVRLALLPNDGPSGVYYIRNEVASF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01133 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 283 IPR036291 -
Tsu08g01133 298 Pfam Enoyl-(Acyl carrier protein) reductase 214 263 - -
Tsu08g01133 298 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 298 - -
Tsu08g01133 298 Gene3D - 2 298 - -
Tsu08g01133 298 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 298 - -
Tsu08g01133 298 Pfam short chain dehydrogenase 8 172 IPR002347 -
Tsu08g01133 298 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 210 238 IPR020904 GO:0016491
Tsu08g01133 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Tsu08g01133 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Tsu08g01133 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 242 IPR002347 -
Tsu08g01133 298 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Tsu08g01133 298 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Tsu08g01133 298 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Tsu08g01133 298 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Tsu08g01133 298 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01133 Tsu-Chr8 12481517 12484839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01133 3 268 Acyl Lipid Metabolism Gene Families AT1G63380 26.978 2.70e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01133 K15095 - gmx:100801677 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01133 08 12481517 12484839 Tsu08g01133 08 12481517 12484839 ECH